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	<title>Anti-Aging Firewalls</title>
	<link>http://anti-agingfirewalls.com</link>
	<description>A weblog on the science and practices of living healthily very long - perhaps hundreds of years.</description>
	<pubDate>Thu, 11 Mar 2010 02:12:00 +0000</pubDate>
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		<title>The social cost of Alzheimer’s disease and late-life dementia</title>
		<link>http://anti-agingfirewalls.com/2010/03/11/the-social-cost-of-alzheimer%e2%80%99s-disease-and-late-life-dementia/</link>
		<comments>http://anti-agingfirewalls.com/2010/03/11/the-social-cost-of-alzheimer%e2%80%99s-disease-and-late-life-dementia/#comments</comments>
		<pubDate>Thu, 11 Mar 2010 02:12:00 +0000</pubDate>
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		<description><![CDATA[My recent blog posting New views of Alzheimer’s disease and new approaches to treating it describes recent research relating to the disease and new understanding of what creates it.  This week the Alzheimer’s Association has released a new report that describes the social consequence of the disease: 2010 Alzheimer’s Disease Facts and Figures.  I cover [...]]]></description>
			<content:encoded><![CDATA[<p><span style="font-size: 14pt"><font face="Calibri">My recent blog posting <em><a href="http://anti-agingfirewalls.com/2010/02/25/new-views-of-alzheimer%e2%80%99s-disease-and-new-approaches-to-treating-it/"><font color="#800080">New views of Alzheimer’s disease and new approaches to treating it</font></a> </em>describes recent research relating to the disease and new understanding of what creates it.<span>  </span>This week the </font><a href="http://www.alz.org/"><font face="Calibri">Alzheimer’s Association</font></a><font face="Calibri"> has released a new report that describes the social consequence of the disease: <em><a href="http://www.alz.org/documents_custom/report_alzfactsfigures2010.pdf"><font color="#800080">2010 Alzheimer’s Disease Facts and Figures</font></a></em>.<span>  </span>I cover a few highlights from that report in this blog entry, relate the facts and figures to what is known about the cause of the devastating disease,<span>  </span>and offer an opinion of what we should do as a society about Alzheimer’s disease and senile dementia.</font></span></p>
<p><span style="font-size: 14pt"></span><strong><span style="font-size: 14pt"><font face="Calibri">Facts and Figures</font></span></strong></p>
<ul style="margin-top: 0in" type="disc">
<li style="line-height: normal; margin: 6pt 0in 10pt; tab-stops: list .5in" class="MsoNormal"><em><span style="font-size: 14pt"><font face="Calibri">About 16.2 million Americans are now deeply affected by Alzheimer’s, 5.3 million who have the disease and another 10.9 million whose lives are wrapped up in caring for those who have the disease.</font></span></em></li>
</ul>
<p><span style="font-size: 14pt"><font face="Calibri">“In 2009, an estimated 10.9 million family members and friends provided unpaid care for a person with Alzheimer’s disease or another dementia.”<span>  </span>About 94 % of unpaid caregivers are family members; about 60% are women and about 60% are aged over 50.<span>  </span>The quality of the lives of many of these unpaid caregivers is seriously impacted by their caregiver responsibilities. 40% of caregivers of Alzheimer’s disease patients report high emotional stress compared to 28% of caregivers of other older people. “Because Alzheimer’s and other dementias usually progress slowly, most caregivers spend many years in the caregiving role. At any point in time, 32 percent of family and other unpaid caregivers of people with Alzheimer’s and other dementias have been providing help for five years or longer, including 12 percent who have been providing care for 10 years or longer. An additional 43 percent have been providing care for one to four years, and 23 percent have provided care for less than a year.”<span>  </span>(Quotes here are from the report)</font></span></p>
<ul style="margin-top: 0in" type="disc">
<li style="line-height: normal; margin: 6pt 0in 10pt; tab-stops: list .5in" class="MsoNormal"><font face="Calibri"><em><span style="font-size: 14pt">The total current economic impact of the disease is $316 billion, $172 of which is for paid care of those having the disease and $144 billion is for the effort of unpaid caregivers.</span></em><span style="font-size: 14pt"> <span> </span>(Note that these figures do not take into account another very large amount for lost economic productivity of those having the disease.)</span></font></li>
</ul>
<p><font face="Calibri"><span style="color: black; font-size: 14pt">According to the report, payments for health and long-term care services for people with Alzheimer&#8217;s will total $172 billion this year.</span><span><font size="3"> </font></span><span style="color: black; font-size: 14pt">Unpaid <a target="_new" href="http://www.usnews.com/health/family-health/brain-and-behavior/articles/2010/03/09/alzheimers-epidemic-hitting-minorities-hardest.html"><span style="color: #005497; text-decoration: none; text-underline: none">caregivers</span></a> provided 12.5 billion hours of care in 2009, valued at $144 billion with care valued at $11.50 per hour.<span>  </span>It is pointed out that this is more than the federal government spends on Medicare and Medicaid combined for people with Alzheimer&#8217;s and other dementias.</span></font></p>
<ul style="margin-top: 0in" type="disc">
<li style="line-height: normal; margin: 6pt 0in 10pt; tab-stops: list .5in" class="MsoNormal"><font face="Calibri"><em><span style="font-size: 14pt">More than any other disease, Alzheimer’s and other dementias are signature diseases of old age. Death rates rise precipitously with age</span></em><span style="font-size: 14pt">.</span></font></li>
</ul>
<p><span style="font-size: 14pt"><font face="Calibri">Death rate per 100,000</font></span><span style="font-size: 14pt"><font face="Calibri">Age <span>    </span><span>            </span></font></span></p>
<p><span style="font-size: 14pt"><font face="Calibri"><span>                         </span>2000 <span>             </span><span>   </span>2006</font></span></p>
<p><span style="font-size: 14pt"></span><span style="font-size: 14pt"><font face="Calibri">45–54 <span>           </span>0.2 <span>                 </span><span>      </span>0.2</font></span></p>
<p><span style="font-size: 14pt"></span><span style="font-size: 14pt"><font face="Calibri">55–64 <span>           </span>2.0 <span>                 </span><span>      </span>2.1</font></span></p>
<p><span style="font-size: 14pt"></span><span style="font-size: 14pt"><font face="Calibri">65–74 <span>           </span>18.7 <span>              </span><span>    </span>20.2</font></span></p>
<p><span style="font-size: 14pt"></span><span style="font-size: 14pt"><font face="Calibri">75–84 <span>           </span>139.6 <span>            </span><span>  </span>175.6</font></span></p>
<p><span style="font-size: 14pt"></span><font face="Calibri"><span style="font-size: 14pt">85+ <span>      </span><span>  </span><span>        </span><span> </span>667.7 <span>             </span>848.3</span><span style="font-size: 14pt"></span></font><span style="font-size: 14pt"><font face="Calibri"> </font></span></p>
<p><span style="font-size: 14pt"></span><span style="font-size: 14pt"><span style="font-size: 14pt"><font face="Calibri">Other diseases of old age do not present such a steep rise in the death rate with increasing age.<span>  </span>“To put such age-related differences into perspective, for U.S. deaths in 2006, the differences in total mortality rates from all causes of death for those aged 65–74 and those aged 75–84 was 2.5-fold, and between the 75–84 age group and the 85 and older age group, 2.6-fold. For diseases of the heart, the differences were 2.8-fold and 3.2-fold, respectively.<span>  </span>For all cancers, the differences were 1.7-fold and 1.3-fold respectively. The corresponding differences for Alzheimer’s were 8.7-fold and 4.8-fold.<span>  </span>This is because Alzheimer’s is most likely caused by cell senescence of microglia, increasing cell senescence being a normal consequence of the aging process.<span>  </span>Getting Alzheimer’s is part of normal aging.<span>  </span>It is not necessarily caused by a bacterium or virus and does not necessarily require a gene defect although it could be triggered by such conditions.</font></span></span></p>
<p><span style="font-size: 14pt"><span style="font-size: 14pt"></span><span style="font-family: Symbol; font-size: 14pt"><span>·<span style="font: 7pt 'Times New Roman'">        </span></span></span><em><span style="font-size: 14pt"><font face="Calibri">There is currently no treatment for the disease</font></span></em><span style="font-size: 14pt"><font face="Calibri"><span> </span></font></span></span></p>
<p><span style="font-size: 14pt"><span style="font-size: 14pt"><font face="Calibri"><span></span>“No treatment is available to slow or stop the deterioration of brain cells in Alzheimer’s disease. The U.S. Food and Drug Administration has approved five drugs that temporarily slow worsening of symptoms for about six to 12 months, on average, for about half of the individuals who take them.”</font></span><span style="font-size: 14pt"><font face="Calibri"> </font></span></span><span style="font-size: 14pt"> </span><span style="font-size: 14pt"><font face="Calibri">Puny results for expensive drugs is all the pharmaceutical industry has been able to provide at this point.</font></span><span style="font-size: 14pt"><font face="Calibri"> </font></span><span style="font-size: 14pt"> </span></p>
<p><span style="font-size: 14pt"></span><span style="font-family: Symbol; font-size: 14pt"><span>·<span style="font: 7pt 'Times New Roman'">        </span></span></span><font face="Calibri"><em><span style="font-size: 14pt">While the risk of death due to other diseases continues to decrease with time, the risk of death due to Alzheimer’s disease is rapidly increasing</span></em><span style="font-size: 14pt">.</span></font><span style="font-size: 14pt"><font face="Calibri"> </font></span></p>
<p><span style="font-size: 14pt"></span><span style="font-size: 14pt"><span style="font-size: 14pt"><font face="Calibri">Between 3000 and 2006 causes of death % changes:</font></span></span></p>
<p><span style="font-size: 14pt"><span style="font-size: 14pt"></span><span style="font-size: 14pt"><font face="Calibri">Alzheimer’s disease<span>           </span>+46.1%</font></span></span></p>
<p><span style="font-size: 14pt"><span style="font-size: 14pt"></span><span style="font-size: 14pt"><font face="Calibri">Stroke<span>                                    </span>-18.2%</font></span></span></p>
<p><span style="font-size: 14pt"><span style="font-size: 14pt"></span><span style="font-size: 14pt"><font face="Calibri">Prostate cancer<span>                  </span><span>  </span>-8.7%<span>           </span></font></span></span></p>
<p><span style="font-size: 14pt"><span style="font-size: 14pt"><font face="Calibri"><span></span></font></span><span style="font-size: 14pt"><font face="Calibri">Heart disease<span>                       </span>-11.1%</font></span></span></p>
<p><span style="font-size: 14pt"><span style="font-size: 14pt"></span><span style="font-size: 14pt"><font face="Calibri">HIV<span>                                         </span>-16.3%</font></span></span></p>
<p><span style="font-size: 14pt"><span style="font-size: 14pt"></span><span style="font-size: 14pt"><font face="Calibri">The report projects 500,000 new cases of Alzheimer&#8217;s will be diagnosed this year. The report estimates that almost a million new cases of Alzheimer&#8217;s will be diagnosed annually by 2050.</font></span><span style="font-family: 'Verdana','sans-serif'; color: black; font-size: 10pt"> </span></span></p>
<ul type="disc">
<li style="line-height: normal; margin: 0in 0in 6pt; tab-stops: list .5in" class="MsoNormal"><em><span style="font-size: 14pt"><font face="Calibri">Medicare costs for Alzheimer&#8217;s patients are almost three times higher than for other older people and Medicaid costs are almost nine times higher.</font></span></em></li>
</ul>
<p><font face="Calibri"><span style="font-size: 14pt">“<em>Hospital</em>: In 2004, Medicare beneficiaries aged 65 and older with Alzheimer’s and other dementias were 3.1 times more likely than other Medicare beneficiaries in the same age group to have a </span><span style="font-size: 14pt">hospital stay.<span>  </span>&#8211; </span><em><span style="font-size: 14pt">Skilled nursing facility:</span></em><span style="font-size: 14pt"> In 2004, Medicare beneficiaries aged 65 and older with Alzheimer’s and other dementias were eight times more likely than other Medicare beneficiaries in the same age group to have a Medicare-covered stay in a skilled nursing facility.</span><span style="font-size: 14pt">”</span></font></p>
<ul type="disc">
<li style="line-height: normal; margin: 0in 0in 6pt; tab-stops: list .5in" class="MsoNormal"><em><span style="font-size: 14pt"><font face="Calibri">The disease affects women more than men and blacks and Hispanics more than whites.</font></span></em>
<ul type="circle">
<li style="line-height: normal; margin: 0in 0in 6pt; tab-stops: list 1.0in" class="MsoNormal"><span style="font-size: 14pt"><font face="Calibri">Blacks are roughly twice as likely to get the disease compared to whites.</font></span></li>
<li style="line-height: normal; margin: 0in 0in 6pt; tab-stops: list 1.0in" class="MsoNormal"><span style="font-size: 14pt"><font face="Calibri">Hispanics<span>  </span>are roughly 1.5 times as likely to get the disease compared to whites.</font></span></li>
<li style="line-height: normal; margin: 0in 0in 6pt; tab-stops: list 1.0in" class="MsoNormal"><span style="font-size: 14pt"><font face="Calibri">Women are more or less 1.7 times or more likely to get the disease then men, depending on the age group.</font></span></li>
</ul>
</li>
<li style="line-height: normal; margin: 0in 0in 6pt; tab-stops: list .5in" class="MsoNormal"><em><span style="font-size: 14pt"><font face="Calibri">Alzheimer disease patients are likely to have concurrent medical issues</font></span></em></li>
</ul>
<p><em><span style="font-size: 14pt"><font face="Calibri">Percentage with</font></span></em><em><span style="font-size: 14pt"><font face="Calibri">Alzheimer’s or Other</font></span></em><em><span style="font-size: 14pt"><font face="Calibri">Dementia and the</font></span></em><em><span style="font-size: 14pt"><font face="Calibri">Coexisting Condition <span>      </span></font></span></em></p>
<p><em><span style="font-size: 14pt"><font face="Calibri"><span></span></font></span></em><em><span style="font-size: 14pt"></span></em><span style="font-size: 14pt"><font face="Calibri">Hypertension <span>                           </span><span>                        </span>60%</font></span></p>
<p><span style="font-size: 14pt"></span><span style="font-size: 14pt"><font face="Calibri">Coronary heart disease <span>                                 </span>26%</font></span></p>
<p><span style="font-size: 14pt"></span><span style="font-size: 14pt"><font face="Calibri">Stroke—late effects <span>                                        </span>25%</font></span></p>
<p><span style="font-size: 14pt"></span><span style="font-size: 14pt"><font face="Calibri">Diabetes <span>                                                            </span>23%</font></span></p>
<p><span style="font-size: 14pt"></span><span style="font-size: 14pt"><font face="Calibri">Osteoporosis <span>                                                    </span>18%</font></span></p>
<p><span style="font-size: 14pt"></span><span style="font-size: 14pt"><font face="Calibri">Congestive heart failure <span>                               </span>16%</font></span></p>
<p><span style="font-size: 14pt"></span><span style="font-size: 14pt"><font face="Calibri">Chronic obstructive pulmonary disease <span>    </span>15%</font></span></p>
<p><span style="font-size: 14pt"></span><span style="font-size: 14pt"><font face="Calibri">Cancer <span>                                                                </span>13%</font></span></p>
<p><span style="font-size: 14pt"></span><span style="font-size: 14pt"><font face="Calibri">Parkinson’s disease <span>                                        </span><span>   </span>8%</font></span></p>
<p><span style="font-size: 14pt"></span><span style="font-size: 14pt"><font face="Calibri">Data is for 2004 medicare beneficiaries aged 65 and older</font></span></p>
<p><span style="font-size: 14pt"></span><strong><span style="font-size: 14pt"><font face="Calibri">What more can be done about Alzheimer’s disease?</font></span></strong></p>
<p><strong><span style="font-size: 14pt"></span></strong><span style="font-size: 14pt"><font face="Calibri">I would like to see a few things shifted.</font></span></p>
<p><span style="font-size: 14pt"></span><span style="font-size: 14pt"><span><font face="Calibri">1.</font><span style="font: 7pt 'Times New Roman'">     </span></span></span><span style="font-size: 14pt"><font face="Calibri">I think it would be beneficial to stop viewing Alzheimer’s disease as <em>yet another disease we are seeking to cu</em>re and start viewing AD as intrinsically wrapped up with aging, <em>one of several aging processes that gets ahead of the other aging processes in AD patients</em>.<span>  </span>The present <em>find-a-specific-cure</em> viewpoint has not worked and can’t work because AD is due to cell senescence of microglia. It is due to a process that is intrinsic to aging itself.<span>  </span>In fact, if we could delay all other age-related diseases, then AD would get virtually everybody by age 125.<span>  </span>In other words, curing AD and “curing aging” are likely to be part and parcel of the same thing.</font></span></p>
<p><span style="font-size: 14pt"></span><span style="font-size: 14pt"><span><font face="Calibri">2.</font><span style="font: 7pt 'Times New Roman'">     </span></span></span><span style="font-size: 14pt"><font face="Calibri">Major shifts in AD research are in order.<span>  </span>Efforts to find a chemical by trial-and-error that is a partial or entire cure, such as pharmaceutical companies have been pursuing for decades, are a modern form of alchemy rather than scientific research.<span>  </span>Any research that is going to move us forward has to look at the fundamental molecular biological and genetic-genomic processes involved.<span>  </span></font></span></p>
<p><span style="font-size: 14pt"><font face="Calibri"><span></span></font></span><span style="font-size: 14pt"><span><font face="Calibri">3.</font><span style="font: 7pt 'Times New Roman'">     </span></span></span><font face="Calibri"><span style="font-size: 14pt">I suspect that current research and clinical trials aimed at reducing or eliminating tau tangles and </span><span style="color: black; font-size: 14pt" lang="EN">amyloid-beta plaques </span><span style="font-size: 14pt">in AD patients(<a href="http://anti-agingfirewalls.com/2010/02/25/new-views-of-alzheimer%e2%80%99s-disease-and-new-approaches-to-treating-it/"><font color="#800080">ref</font></a>) may lead to therapies that slow the progress of AD but are unlikely to produce cures because they do not address the root cause of the disease.</span></font></p>
<p><font face="Calibri"><span style="font-size: 14pt"></span></font><span style="font-size: 14pt"><span><font face="Calibri">4.</font><span style="font: 7pt 'Times New Roman'">     </span></span></span><span style="font-size: 14pt"><font face="Calibri">I think the research cited in the blog entry <em><a href="http://anti-agingfirewalls.com/2010/02/25/new-views-of-alzheimer%e2%80%99s-disease-and-new-approaches-to-treating-it/"><font color="#800080">New views of Alzheimer’s disease and new approaches to treating it</font></a> </em>points its fingers at microglial cell senescence as a root cause for AD.<span>  </span>Additional research I have reviewed since writing that blog entry confirms this conclusion.<span>  </span>Therefore, any treatment that fundamentally addresses AD must address cell senescence and/or failure of cell replacement through stem cell differentiation.<span>  </span>If a treatment works to significantly delay or prevent AD it is likely to work to significantly delay or prevent many other diseases and processes of aging as well.<span>  </span>The answer may lie in a more effective form of telomerase activation(</font><a href="http://www.vincegiuliano.name/Antiagingfirewalls.htm#TelomereShorteningFirewall"><font face="Calibri">ref</font></a><font face="Calibri">), in reversing epigenomic markers of aging such as DNA methylation at selected promoter sites(</font><a href="http://anti-agingfirewalls.com/2010/02/08/epigenetics-going-mainstream/"><font face="Calibri" color="#800080">ref</font></a><font face="Calibri">) or in manipulating the stem cell supply chain probably using induced pluripotent stem cells(</font><a href="http://anti-agingfirewalls.com/2010/01/26/progress-in-closing-the-stem-cell-supply-chain-loop/"><font face="Calibri" color="#800080">ref</font></a><font face="Calibri">) or embryonic stem cells(</font><a href="http://anti-agingfirewalls.com/2010/02/05/human-embryonic-stem-cells-and-alzheimer%e2%80%99s-disease/"><font face="Calibri" color="#800080">ref</font></a><font face="Calibri">).<span>  </span>Perhaps activation of the BDNF gene could be involved(</font><a href="http://anti-agingfirewalls.com/2010/03/03/bdnf-gene-%e2%80%93-personality-mental-balance-dementia-aging-and-epigenomic-imprinting/"><font face="Calibri" color="#800080">ref</font></a><font face="Calibri">).<span>  </span>Those are the kinds of basic research that should be encouraged.</font></span></p>
<p><span style="font-size: 14pt"></span><span style="font-size: 14pt"><span><font face="Calibri">5.</font><span style="font: 7pt 'Times New Roman'">     </span></span></span><span style="font-size: 14pt"><font face="Calibri">Another shift in aging and Alzheimer’s research is that there should be lots more of it. The report says &#8220;for every $25,000 the government spends on care for people with Alzheimer&#8217;s and dementia, it spends only $100 for Alzheimer research.&#8221;<span>  </span>This is an order-of-magnitude too little.</font></span></p>
<p><span style="font-size: 14pt"></span><span style="font-size: 14pt" lang="EN"><span><font face="Calibri">6.</font><span style="font: 7pt 'Times New Roman'">     </span></span></span><font face="Calibri"><span style="font-size: 14pt">Finally it is important to reiterate that a number of approaches are available to ordinary people that can usually delay onset of Alzheimer’s disease, other forms of dementia and other diseases resulting from cell senescence.<span>  </span>These are the measures in the anti-aging firewalls in my treatise </span><span style="font-size: 14pt" lang="EN"><a href="http://www.vincegiuliano.name/Antiagingfirewalls.htm"><font color="#800080">ANTI-AGING FIREWALLS THE SCIENCE AND TECHNOLOGY OF LONGEVITY</font></a>.<span>  </span>Many of my blog entries are also relevant such as </span><em><span style="font-size: 14pt"><a href="http://anti-agingfirewalls.com/2009/07/07/warding-off-alzheimer%e2%80%99s-disease-and-things-in-my-diet/"><font color="#800080">Warding off Alzheimer’s Disease and things in my diet</font></a> </span></em><span style="font-size: 14pt" lang="EN">and <em><a href="http://anti-agingfirewalls.com/2009/03/06/six-ps-of-health-and-longevity/"><font color="#800080">Seven Ps of health and longevity</font></a></em></span><em><span style="font-size: 14pt">.<span>  </span></span></em><span style="font-size: 14pt" lang="EN">And a search of blog entries using the term</span><em><span style="font-size: 14pt" lang="EN"> </span></em><em><span style="font-size: 14pt" lang="EN">dementia</span></em><span style="font-size: 14pt" lang="EN"> will turn up several additional relevant blog entries.</span></font></p>
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		<title>Vitamin D3 and the immune response</title>
		<link>http://anti-agingfirewalls.com/2010/03/09/vitamin-d3-and-the-immune-response/</link>
		<comments>http://anti-agingfirewalls.com/2010/03/09/vitamin-d3-and-the-immune-response/#comments</comments>
		<pubDate>Tue, 09 Mar 2010 03:59:04 +0000</pubDate>
		<dc:creator>admin</dc:creator>
		
		<category><![CDATA[Uncategorized]]></category>

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		<description><![CDATA[Vitamin D is much in the news nowadays.  Over the last 10 years it has become increasingly clear that vitamin D plays several important roles beyond those involved in bone health.  Vitamin D presence or absence is implicated in several disease processes including tuberculosis and cancer and an adequate level of vitamin D is required [...]]]></description>
			<content:encoded><![CDATA[<p><span style="font-size: 14pt"><font face="Calibri">Vitamin D is much in the </font><a href="http://news.google.com/news/search?aq=2m&amp;pz=1&amp;cf=all&amp;ned=us&amp;hl=en&amp;q=what+is+vitamin+d3&amp;oq=vitamin+D3"><font face="Calibri" color="#800080">news</font></a><font face="Calibri"> nowadays.<span>  </span>Over the last 10 years it has become increasingly clear that vitamin D plays several important roles beyond those involved in bone health.<span>  </span>Vitamin D presence or absence is implicated in several disease processes including tuberculosis and cancer and an adequate level of vitamin D is required for immune system responsiveness.<span>  </span>A just-published research study reveals a critical way in which vitamin D is involved in the immune response.<span>  </span>This blog entry reviews a little background on vitamin D3, what is known about the vitamin D receptor (VDR) protein, the new research, and implications for health and longevity.</font></span></p>
<p><span style="font-size: 14pt"></span><strong><span style="font-size: 14pt"><font face="Calibri">Vitamin D and the VDR</font></span></strong></p>
<p><strong><span style="font-size: 14pt"></span></strong><font face="Calibri"><span style="font-size: 14pt">Vitamin D is mentioned several times in my treatise and is a central pillar of the combined </span><span style="font-size: 14pt" lang="EN">anti-aging firewalls </span><em><span style="font-family: 'Calibri','sans-serif'; color: black" lang="EN"><a href="http://www.vincegiuliano.name/Antiagingfirewalls.htm#SUPPLEMENTSINCOMBINDEDFIREWALLS"><span style="font-size: 14pt"><font color="#800080">Supplement Regimen</font></span></a></span></em><span style="font-size: 14pt">. <span>   </span>I have also discussed or mentioned it in many` blog posts.<span>  </span>The post <em><a href="http://anti-agingfirewalls.com/2009/11/05/vitamin-d-don%e2%80%99t-fall-for-it/"><font color="#800080">Vitamin D - don’t fall for it</font></a></em><span>  </span>describes research on how vitamin D administration in nursing communities significantly reduces the number of falls and consequent hip fractures and other orthopedic injuries.<span>  </span>The blog post <em><a href="http://anti-agingfirewalls.com/2009/10/19/klotho-anti-aging-gene-in-the-news/"><font color="#800080">Klotho anti-aging gene in the news</font></a></em> describes how “</span><span style="font-size: 14pt" lang="EN">Klotho expression is also important for averting premature aging due to overexpression of Vitamin D,” citing a number of papers relevant to that topic.  And the post </span><em><span style="font-size: 14pt"><a href="http://anti-agingfirewalls.com/2009/10/20/hypervitaminosis-d-and-premature-aging/"><font color="#800080">Hypervitaminosis D and premature aging</font></a> </span></em><span style="font-size: 14pt">indicates, among other topics, how mice with their VDR gene knocked out age prematurely.<span>  </span></span><span style="font-size: 14pt" lang="EN">“The publication <em><span style="font-family: 'Calibri','sans-serif'"><a href="http://www.ncbi.nlm.nih.gov/pubmed/19500727?ordinalpos=1&amp;itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DiscoveryPanel.Pubmed_Discovery_RA&amp;linkpos=1&amp;log$=relatedarticles&amp;logdbfrom=pubmed"><span style="font-size: 11pt">Premature aging in vitamin D receptor mutant mice</span></a> </span></em> (vitamin D receptor (VDR) knockout mice)  states “Overall, VDR KO mice showed several aging related phenotypes, including poorer survival, early alopecia, thickened skin, enlarged sebaceous glands and development of epidermal cysts.”  “Since the phenotype of aged VDR knockout mice is similar to mouse models with hypervitaminosis D(3), our study suggests that VDR genetic ablation promotes premature aging in mice, and that vitamin D(3) homeostasis regulates physiological aging.”</span></font></p>
<p><font face="Calibri"><span style="font-size: 14pt" lang="EN">Vitamin D3 (1alpha,25-dihydroxyvitamin D) is the active form of vitamin D taken in supplements and is of concern in this post.<span>  </span>It functions as a hormone. <span> </span>D3 is also known as <em><span>calcitriol</span></em>.<span>  </span>A growing body of research publications point to the health importance of D3 in numerous biological pathways that go beyond bone health.<span>  </span>I cite only two as examples.<span>  </span>According to the 2008 </span><span style="font-size: 14pt" lang="EN">publication </span><em><span style="font-size: 14pt">The <a href="http://www.ncbi.nlm.nih.gov/pubmed/18660678"><font color="#800080">noncalciotropic actions of vitamin D</font></a><a href="http://www.ncbi.nlm.nih.gov/pubmed/18660678"><font color="#800080">: recent clinical developments</font></a></span></em><span style="font-size: 14pt" lang="EN">, “</span><span style="font-size: 14pt">RECENT FINDINGS: 1,25-Dihydroxyvitamin D stimulates the innate immune system, facilitating the clearance of infections such as tuberculosis. Hypovitaminosis D has been associated with several autoimmune disorders, various malignancies, and cardiovascular risk factors in a number of recent epidemiologic reports. Based on these observational reports, vitamin D and its analogues are being evaluated for the prevention and treatment of a variety of conditions, with early findings showing mixed results. SUMMARY: The broad tissue distribution of the 25-hydroxyvitamin D 1alpha-hydroxylase enzyme and the vitamin D receptor establish a role for 1,25-dihydroxyvitamin D in the pathophysiology of various disease states and provide new therapeutic targets for vitamin D and its analogues.”</span></font></p>
<h1 style="line-height: normal; margin: 12pt 0in 3pt; background: white"><span style="font-family: 'Calibri','sans-serif'; font-size: 14pt; font-weight: normal">A 2007 publication <em><a href="http://www.ncbi.nlm.nih.gov/pubmed/17635821"><font color="#800080">Expanding role for vitamin D in chronic kidney disease: importance of blood 25-OH-D levels and extra-renal 1alpha-hydroxylase in the classical and nonclassical actions of 1alpha,25-dihydroxy vitamin D(3</font></a>) </em>reports “Recent advances in the understanding of vitamin D have revolutionized our view of this old nutritional factor and suggested that it has much wider effects on the body than ever believed before. In addition to its well-known effects on calcium/phosphate homeostasis, vitamin D, through its hormonal form, 1alpha,25-dihydroxyvitamin D(3) or calcitriol, is a cell differentiating factor and anti-proliferative agent with actions on a variety of tissues around the body (e.g., skin, muscle, immune system). By influencing gene expression in multiple tissues, calcitriol influences many physiological processes besides calcium/phosphate homeostasis including muscle and keratinocyte differentiation, insulin secretion, blood pressure regulation, and the immune response. The incidence of various diseases including epithelial cancers, multiple sclerosis, muscle weakness as well as bone-related disorders has been correlated with vitamin D deficiency/insufficiency and has led to a re-evaluation of recommended daily intakes both in the normal subject and CKD patient.&#8221;</span></h1>
<h1 style="line-height: normal; margin: 12pt 0in 3pt; background: white"><span style="font-family: 'Calibri','sans-serif'; font-size: 14pt; font-weight: normal"></span><span style="font-size: 14pt" lang="EN"><font face="Calibri"><span style="font-style: normal; font-family: 'Calibri','sans-serif'; font-weight: normal">Even back in the early 2000s it was clear that D3 was important for the functioning of the immune system, but how and why was unclear.<span>  </span>The 2004 publication </span><span style="font-family: 'Calibri','sans-serif'; font-weight: normal"><a href="http://www.ajcn.org/cgi/reprint/80/6/1717S.pdf"><font color="#800080"><em>Vitamin D status, 1,25-dihydroxyvitamin D3, and the immune system<span></span></em></font></a><a title="RFN4" name="RFN4"></a><em> </em></span><span style="font-style: normal; font-family: 'Calibri','sans-serif'; font-weight: normal"><span> </span>reported “The active form of vitamin D, 1,25-dihydroxyvitamin D3 [1,25(OH)2D3], has been shown to inhibit the development of autoimmune diseases, including inflammatory bowel disease (IBD). Paradoxically, other immune system-mediated diseases (experimental asthma) and immunity to infectious organisms were unaffected by 1,25(OH)2D3 treatment. There are similar paradoxical effects of vitamin D deficiency on various immune system functions. Vitamin D and vitamin D receptor (VDR) deficiency resulted in accelerated IBD.</span></font></span></h1>
<h1 style="line-height: normal; margin: 12pt 0in 3pt; background: white"><span style="font-size: 14pt" lang="EN"><font face="Calibri"><span style="font-style: normal; font-family: 'Calibri','sans-serif'; font-weight: normal">”</span>The </font><a href="http://en.wikipedia.org/wiki/Calcitriol_receptor"><font face="Calibri" color="#800080">vitamin D3 receptor</font></a><font face="Calibri"> (VDR) gene generates a protein which is a transcription factor that is activated by the presence of D3. “The <strong>calcitriol receptor</strong>, also known as the </font><a href="http://en.wikipedia.org/wiki/Vitamin_D" title="Vitamin D"><font face="Calibri" color="#800080">vitamin D</font></a><font face="Calibri"> receptor (<strong>VDR</strong>) and also known as <strong>NR1I1</strong> (nuclear receptor subfamily 1, group I, member 1), is a member of the </font><a href="http://en.wikipedia.org/wiki/Nuclear_receptor" title="Nuclear receptor"><font face="Calibri">nuclear receptor</font></a><font face="Calibri"> family of </font><a href="http://en.wikipedia.org/wiki/Transcription_factor" title="Transcription factor"><font face="Calibri">transcription factors</font></a><font face="Calibri">.<sup id="cite_ref-0"><a href="http://en.wikipedia.org/wiki/Calcitriol_receptor#cite_note-0">[1]</a></sup> Upon activation by vitamin D, the VDR forms a heterodimer with the </font><a href="http://en.wikipedia.org/wiki/Retinoid-X_receptor" title="Retinoid-X receptor"><font face="Calibri">retinoid-X receptor</font></a><font face="Calibri"> and binds to </font><a href="http://en.wikipedia.org/wiki/Hormone_response_element" title="Hormone response element"><font face="Calibri">hormone response elements</font></a><font face="Calibri"> on </font><a href="http://en.wikipedia.org/wiki/DNA" title="DNA"><font face="Calibri">DNA</font></a><font face="Calibri"> resulting in </font><a href="http://en.wikipedia.org/wiki/Expression" title="Expression"><font face="Calibri">expression</font></a><font face="Calibri"> or </font><a href="http://en.wikipedia.org/wiki/Transrepression" title="Transrepression"><font face="Calibri">transrepression</font></a><font face="Calibri"> of specific </font><a href="http://en.wikipedia.org/wiki/Gene" title="Gene"><font face="Calibri">geneproducts</font></a><font face="Calibri">. In humans, the vitamin D receptor is encoded by the <em>VDR</em> </font><a href="http://en.wikipedia.org/wiki/Gene" title="Gene"><font face="Calibri">gene</font></a><font face="Calibri">.<sup id="cite_ref-pmid1662663_1-0"><a href="http://en.wikipedia.org/wiki/Calcitriol_receptor#cite_note-pmid1662663-1">[2]</a></sup></font></span><font face="Calibri"><strong><em><span><font size="3">”</font></span></em></strong><span style="font-size: 14pt" lang="EN"> </span><span style="font-size: 14pt" lang="EN"> </span><span style="font-size: 14pt">Exploration of the activities of VDR has been key to discovering the various roles of vitamin D3 in maintaining health.</span></font></h1>
<h2 style="margin: 12pt 0in 3pt; background: white"><span style="font-style: normal; font-family: 'Calibri','sans-serif'"><font size="3">Vitamin D3 in the immune response</font></span></h2>
<p><span style="font-size: 14pt"><font face="Calibri"><span style="line-height: 115%; font-family: 'Calibri','sans-serif'; font-size: 14pt">The new 7 March 2010 publication </span><span><a href="http://www.citeulike.org/user/KGelling/article/6775173"><span style="font-weight: normal"><font color="#800080">Vitamin D controls T cell antigen receptor signaling and activation of human T cells</font></span></a><em> </em>reports an important finding - </span><span>Presence of vitamin D3 in the bloodstream is required for T cells being activated and mounting an effective immune response.<em> <span> </span>As </em><a href="http://www.sciencedaily.com/releases/2010/03/100307215534.htm"><font color="#800080"><em>reported yesterday</em></font></a><em> in</em> Science Daily: “For T cells to detect and kill foreign pathogens such as clumps of bacteria or viruses, the cells must </span><span>first be &#8216;triggered&#8217; into action and &#8216;transform&#8217; from inactive and harmless immune cells into killer cells that are primed to seek out and destroy all traces of a foreign pathogen. &#8212; The researchers found that the T cells rely on vitamin D in order to activate and they would remain dormant, &#8216;naïve&#8217; to the possibility of threat if vitamin D is lacking in the blood.”<span>  </span>The sequence of events is “<span style="color: black"><span class="msoIns"><ins><font color="#008080">First when the naive T cell recognizes foreign invaders like bacteria or viruses with T cell receptor (TCR), it sends activating signals </font></ins></span></span></span><span style="line-height: 115%; font-family: 'Calibri','sans-serif'; color: black; font-size: 11pt">-</span><span style="line-height: 115%; font-family: 'Calibri','sans-serif'; color: black; font-size: 14pt"><span class="msoIns"><ins><font color="#008080"> to the vitamin D receptor gene. The VDR gene then starts producing DVR </font><a target="_top" href="http://www.foodconsumer.org/newsite/"><span style="color: black; text-decoration: none; text-underline: none">protein</span></a><font color="#008080">, which binds vitamin D in the T cell </font></ins></span></span><span style="line-height: 115%; font-family: 'Calibri','sans-serif'; color: black; font-size: 11pt">-</span><span style="line-height: 115%; font-family: 'Calibri','sans-serif'; color: black; font-size: 14pt"><span class="msoIns"><ins><font color="#008080"> and becomes activated. Then the vitamin D bound and activated DVR gets into the cell nucleus and activates the gene for PLC-gamma1 (5), which in turn produces PLC-gamma1 protein </font></ins></span></span><span style="line-height: 115%; font-family: 'Calibri','sans-serif'; color: black; font-size: 11pt">-</span><span><span class="msoIns"><ins><font color="#008080"> and &#8220;the T cells can get started</font></ins></span>(<a href="http://www.foodconsumer.org/newsite/Nutrition/Vitamins/vitamin_d_deficiency_is_why_you_get_flu_0703100554.html"><font color="#800080">ref</font></a>)<span class="msoIns"><ins><font color="#008080">.</font></ins></span>””</span></font></span></p>
<h2></h2>
<h2 style="margin: 12pt 0in 3pt; background: white"><span style="font-size: 14pt"><font face="Calibri"><em><span></span></em>““Professor Carsten Geisler from the Department of International Health, Immunology and Microbiology explains that &#8220;when a T cell is exposed to a foreign pathogen, it extends a signaling device or &#8216;antenna&#8217; known as a vitamin D receptor, with which it searches for vitamin D. This means that the T cell must have vitamin D or activation of the cell will cease. If the T cells cannot find enough vitamin D in the blood, they won&#8217;t even begin to mobilize. &#8221; &#8212; T cells that are successfully activated transform into one of two types of immune cell. They either become killer cells that will attack and destroy all cells carrying traces of a foreign pathogen or they become helper cells that assist the immune system in acquiring &#8220;memory&#8221;. The helper cells send messages to the immune system, passing on knowledge about the pathogen so that the immune system can recognize and remember it at their next encounter. T cells form part of the adaptive immune system, which means that they function by teaching the immune system to recognize and adapt to constantly changing threats(</font><a href="http://www.sciencedaily.com/releases/2010/03/100307215534.htm"><font face="Calibri" color="#800080">ref</font></a><font face="Calibri">).</font></span><font face="Calibri"><em><span style="color: black; font-size: 14pt">”</span></em></font></h2>
<p><font face="Calibri"><strong><em><span style="color: black; font-size: 14pt"></span></em></strong><span style="color: black; font-size: 14pt"></span></font><strong><span style="color: black; font-size: 14pt"><font face="Calibri">Implications</font></span></strong></p>
<p><strong><span style="color: black; font-size: 14pt"></span></strong><span style="color: black; font-size: 14pt"><font face="Calibri">The new finding can explain a lot of the protective effects of D3,<span>  </span>ranging from reducing susceptibility to colds and flu(</font><a href="http://www.scientificamerican.com/blog/60-second-science/post.cfm?id=vitamin-d-deficiency-linked-to-more-2009-02-23"><font face="Calibri" color="#800080">ref</font></a><font face="Calibri">) to the role of D3 in chronic kidney disease(</font><a href="http://www.ncbi.nlm.nih.gov/pubmed/17635821?ordinalpos=1&amp;itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_SingleItemSupl.Pubmed_Discovery_RA&amp;linkpos=5&amp;log$=relatedreviews&amp;logdbfrom=pubmed"><font face="Calibri" color="#800080">ref</font></a><font face="Calibri">), reducing risk of asthma and respiratory infections(</font><a href="http://www.ncbi.nlm.nih.gov/pubmed/19063829"><font face="Calibri" color="#800080">ref</font></a><font face="Calibri">), its role in Graves&#8217; hyperthyroidism(</font><a href="http://www.ncbi.nlm.nih.gov/pubmed/18927213?ordinalpos=1&amp;itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_SingleItemSupl.Pubmed_Discovery_PMC&amp;linkpos=1&amp;&amp;log$=citedinpmcarticles&amp;logdbfrom=pubmed"><font face="Calibri" color="#800080">ref</font></a><font face="Calibri">), how it fights placental infection(</font><a href="http://www.sciencedaily.com/releases/2008/12/081201162125.htm"><font face="Calibri" color="#800080">ref</font></a><font face="Calibri">), </font></span><span style="color: black; font-size: 14pt"><font face="Calibri">bacterial vaginosis(</font><a href="http://www.sciencedaily.com/releases/2009/05/090514111414.htm"><font face="Calibri" color="#800080">ref</font></a><font face="Calibri">) and pediatric infections(</font><a href="http://journals.lww.com/pedresearch/Fulltext/2009/05001/The_Vitamin_D_Connection_to_Pediatric_Infections.16.aspx"><font face="Calibri" color="#800080">ref</font></a><font face="Calibri">), and its protective effects against many other infections too numerous to catalog here.<span>  </span>And of course, vitamin D is essential for prevention and control of cardiovascular diseases(</font><a href="http://www.google.com/search?pz=1&amp;cf=all&amp;ned=us&amp;hl=en&amp;q=vitamin+D+cardiovascular&amp;btnmeta%3Dsearch%3Dsearch=Search+the+Web"><font face="Calibri" color="#800080">ref</font></a><font face="Calibri">).<span>  </span>Unless someone is out in the sunlight for sustained periods every day, vitamin D3 supplementation is an absolute health necessity.</font></span></p>
<p><span style="color: black; font-size: 14pt"></span><span style="line-height: 115%; font-family: 'Calibri','sans-serif'; color: black; font-size: 14pt">Please note the <a href="http://anti-agingfirewalls.com/2009/06/29/medical-disclaimer/"><font color="#800080">medical disclaimer</font></a> for this blog.</span></p>
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		<title>Sestrins, longevity and cancers</title>
		<link>http://anti-agingfirewalls.com/2010/03/07/sestrins-longevity-and-cancers/</link>
		<comments>http://anti-agingfirewalls.com/2010/03/07/sestrins-longevity-and-cancers/#comments</comments>
		<pubDate>Sun, 07 Mar 2010 02:39:49 +0000</pubDate>
		<dc:creator>admin</dc:creator>
		
		<category><![CDATA[Uncategorized]]></category>

		<guid isPermaLink="false">http://anti-agingfirewalls.com/2010/03/07/sestrins-longevity-and-cancers/</guid>
		<description><![CDATA[A recent research report indicates that sestrin proteins can inhibit age-related pathologies in fruit flies and contribute to their longevity.  The genes and biological pathways involved exist also in humans.  This blog post reviews what the sestrin genes are, what the sestrin proteins do,  the new research describing the channels through which sestrins promote longevity, [...]]]></description>
			<content:encoded><![CDATA[<p><span style="font-size: 14pt"><font face="Calibri">A </font><a href="http://www.redorbit.com/news/science/1832326/sestrin_inhibits_aging_in_fruit_flies/index.html"><font face="Calibri">recent research report</font></a><font face="Calibri"> indicates that sestrin proteins can inhibit age-related pathologies in fruit flies and contribute to their longevity.<span>  </span>The genes and biological pathways involved exist also in humans.<span>  </span>This blog post reviews what the sestrin genes are, what the sestrin proteins do, <span> </span>the new research describing the channels through which sestrins promote longevity, and how sestrins protect against cancer.</font></span></p>
<p><span style="font-size: 14pt"></span><strong><span style="font-size: 14pt"><font face="Calibri">About sestrins</font></span></strong></p>
<p><strong><span style="font-size: 14pt"></span></strong><font face="Calibri"><span style="font-size: 14pt">Sestrins are small protein molecules produced by three </span><span style="font-size: 14pt">evolutionary conserved <span> </span>genes in mammals, of which </span><span style="font-size: 14pt">the sesn1 and sesn2 genes are activated by the p53 tumor-suppressor gene<span style="line-height: 115%; font-family: 'Calibri','sans-serif'; font-size: 14pt">(<a href="http://www.scopus.com/record/display.url?eid=2-s2.0-0037026596&amp;origin=inward&amp;txGid=P9_KcpEJo6OkvFAUyjosIJ6%3a6">ref</a>)</span><span style="line-height: 115%; font-family: 'Calibri','sans-serif'; font-size: 14pt">(<a href="http://www.scopus.com/record/display.url?eid=2-s2.0-0033531264&amp;origin=inward&amp;txGid=emJpoxAAOTaifQM-yDwl9X1%3a2">ref</a>)</span></span></font><span style="font-size: 14pt"><font face="Calibri">.<span>  </span>Normally, when oxidative or other forms of stress activate p53, the target sesn1 and sesn2 genes are activated in turn. <span> </span>These genes in turn activate AMP-dependent protein kinase (AMPK), which serves to inhibit <span> </span>the Target of Rapamycin. E.g. inhibit <span> </span></font><a href="http://en.wikipedia.org/wiki/Mammalian_target_of_rapamycin"><font face="Calibri">mTOR</font></a><font face="Calibri"> signaling</font><font face="Calibri">(</font><a href="http://www.sciencedirect.com/science?_ob=ArticleURL&amp;_udi=B6WSN-4T5BPWS-G&amp;_user=10&amp;_coverDate=08%2F08%2F2008&amp;_rdoc=1&amp;_fmt=high&amp;_orig=search&amp;_sort=d&amp;_docanchor=&amp;view=c&amp;_acct=C000050221&amp;_version=1&amp;_urlVersion=0&amp;_userid=10&amp;md5=2434326ececa01a8ca129fea03f9c4ba"><font face="Calibri">ref</font></a><font face="Calibri">). Sestrins also provide a level of antioxidant defense in cells<span style="line-height: 115%; font-family: 'Calibri','sans-serif'; font-size: 14pt">(<a href="http://www.scopus.com/record/display.url?eid=2-s2.0-2142815107&amp;origin=inward&amp;txGid=P9_KcpEJo6OkvFAUyjosIJ6%3a2">ref</a>)</span></font></span><span style="font-size: 14pt"><font face="Calibri">. The 2007 publication <em><a href="http://www.sciencedirect.com/science?_ob=ArticleURL&amp;_udi=B6WSN-4T5BPWS-G&amp;_user=10&amp;_coverDate=08%2F08%2F2008&amp;_rdoc=1&amp;_fmt=high&amp;_orig=search&amp;_sort=d&amp;_docanchor=&amp;view=c&amp;_acct=C000050221&amp;_version=1&amp;_urlVersion=0&amp;_userid=10&amp;md5=2434326ececa01a8ca129fea03f9c4ba">p53 Target Genes Sestrin1 and Sestrin2 Connect Genotoxic Stress and mTOR Signaling</a> </em>provides ample detail for those of you who may wish to dig deeper.</font></span></p>
<p><span style="font-size: 14pt"></span><strong><span style="font-size: 14pt"><font face="Calibri">Sestrins and longevity</font></span></strong></p>
<p><strong><span style="font-size: 14pt"></span></strong><font face="Calibri"><span style="font-size: 14pt">The actions of sestrins are interesting from the viewpoint of longevity because for some time it has been known that inhibiton of mTOR signaling can lead to longer lifespans.<span>  </span>See the earlier blog post </span><span class="MsoHyperlink"><em><span style="font-size: 14pt" lang="EN"><a href="http://anti-agingfirewalls.com/2009/09/05/more-mtor-links-to-aging-theories/">More mTOR links to aging theories</a></span></em></span><span style="color: black; font-size: 14pt" lang="EN"> “In</span><span style="font-size: 14pt"> my May 2009 blog post </span><span class="MsoHyperlink"><span style="font-size: 14pt" lang="EN"><a href="http://anti-agingfirewalls.com/2009/05/15/longevity-genes-mtor-and-lifespan/"><em><font color="#0000ff">Longevity genes, mTOR and lifespan</font></em></a></span></span><span style="font-size: 14pt">, I discussed the mTOR signaling pathway in mammals, its role in </span><span style="font-size: 14pt">diseases, the relationship of mTOR to mitochondrial activity and how inhibiting mTOR could conceivably</span><span style="color: black; font-size: 14pt" lang="EN"> be a strategy for extending longevity.  In my Anti-Aging Firewalls treatise I subsequently added <em><span style="font-family: 'Calibri','sans-serif'">ABERRANT mTOR SIGNALLING</span></em> as one of <em><a href="http://www.vincegiuliano.name/Antiagingfirewalls.htm#ADDITIONALCANDIDATETHEORIES">six additional candidate theories of aging</a></em> to be considered.” See also the blog entry <em><a href="http://anti-agingfirewalls.com/2009/07/09/viva-mtor-caveat-mtor/">Viva mTOR! Caveat mTOR!</a></em>.<span>  </span>Note that the m in mTOR stands for mammalian.</span></font><span style="font-size: 14pt"><font face="Calibri">“</font></span></p>
<p><span style="font-size: 14pt"><font face="Calibri">The role of AMPK in regulating cellular energy charge places this enzyme at a central control point in maintaining energy homeostasis. More recent evidence has shown that AMPK activity can also be regulated by physiological stimuli, independent of the energy charge of the cell, including hormones and nutrients(</font><a href="http://themedicalbiochemistrypage.org/ampk.html"><font face="Calibri">ref</font></a><font face="Calibri">).” <span> </span>Exercise can increase AMPK activity as can taking certain polyphenol supplements like resveratrol(</font><a href="http://diabetes.diabetesjournals.org/content/55/8/2180.abstract"><font face="Calibri">ref</font></a><font face="Calibri">).<span>  </span>Another of the conditions that can activate AMPK is calorie restriction, a condition that slows down aging.<span>  </span>On the other hand, over-nutrition activates mTOR, accelerating aging.</font></span></p>
<p><span style="font-size: 14pt"></span><span style="font-size: 14pt"><font face="Calibri">The latest result appeared in the March 5 issue of <em>Science</em>: <em><a href="http://www.sciencemag.org/cgi/content/abstract/327/5970/1223">Sestrin as a Feedback Inhibitor of TOR That Prevents Age-Related Pathologies</a></em>.<span>  </span>“We show that the abundance of Drosophila sestrin (dSesn) is increased upon chronic TOR activation through accumulation of reactive oxygen species that cause activation of c-Jun amino-terminal kinase and transcription factor Forkhead box O (FoxO). <span> </span>Loss of dSesn resulted in age-associated pathologies including triglyceride accumulation, mitochondrial dysfunction, muscle degeneration, and cardiac malfunction, which were prevented by pharmacological activation of AMPK or inhibition of TOR. Hence, dSesn appears to be a negative feedback regulator of TOR that integrates metabolic and stress inputs and prevents pathologies caused by chronic TOR activation that may result from diminished autophagic clearance of damaged mitochondria, protein aggregates, or lipids.”<span>  </span>In other words, if TOR gets ramped up, in the absence of genetic damage it turns on sestrin which ramps TOR down again before TOR activity creates major damage.</font></span></p>
<p><span style="font-size: 14pt"></span><span style="font-family: 'Calibri','sans-serif'; font-size: 14pt">According to a <a href="http://www.sciencedaily.com/releases/2010/03/100304142238.htm">Science Daily article</a> about this latest research, “They also showed that Sestrin, whose structure and biochemical function are conserved between flies and humans, is needed for regulation of a signaling pathway that is the central controller of aging and metabolism. – The new study took advantage of the finding that the fruit fly <em>Drosophila</em>, whose AMPK-TOR signaling pathway functions in the same manner as its mammalian equivalent, contains a single Sestrin gene. Using a variety of genetic techniques, first author Jun Hee Lee inactivated the Sestrin gene of <em>Drosophila</em> and found that although Sestrin-deficient flies do not exhibit any developmental abnormalities, they suffer from under-activation of AMPK and over-activation of TOR &#8212; confirming that Sestrin is needed for keeping this pathway in check. Most importantly, the biochemical imbalance incurred by loss of Sestrin expression resulted in several age-related pathologies. &#8212; &#8220;Strikingly, the pathologies caused by the Sestrin deficiency included accumulation of triglycerides, cardiac arrhythmia and muscle degeneration that occurred in rather young flies,&#8221; said Karin. &#8220;These pathologies are amazingly similar to the major disorders of overweight, heart failure and muscle loss that accompany aging in humans.&#8221; &#8212; Lee and colleagues at UC San Diego and the Sanford-Burnham Institute in La Jolla, California, went on to demonstrate that feeding flies with drugs that either activate AMPK or inhibit TOR conferred protection against most of these early aging, degenerative symptoms. The researchers also found that over-activation of TOR is likely to accelerate aging of heart and skeletal muscles by disrupting an important &#8220;quality control&#8221; process called autophagy. Autophagy allows cells to rid themselves of and replace damaged mitochondria, the little power plants that provide all cells, especially muscles, with energy. However, when mitochondria get old, they produce high concentrations of reactive oxygen species (ROS), or free radicals, that can lead to tissue damage.”</span></p>
<p><span style="font-family: 'Calibri','sans-serif'; font-size: 14pt"></span><span style="font-family: 'Calibri','sans-serif'; font-size: 14pt">I have <a href="http://anti-agingfirewalls.com/2009/07/09/viva-mtor-caveat-mtor/">previously discussed</a> how an effective antiaging intervention might be inhibition of mTOR.<span>  </span>The new research goes on to say how this might be accomplished through activation of sestrins.<span>  </span></span></p>
<p><span style="font-family: 'Calibri','sans-serif'; font-size: 14pt"><span></span></span><strong><span style="font-family: 'Calibri','sans-serif'; font-size: 14pt">Sestrins and cancer</span></strong></p>
<p><strong><span style="font-family: 'Calibri','sans-serif'; font-size: 14pt"></span></strong><span style="font-family: 'Calibri','sans-serif'; font-size: 14pt">In many cancers, oncogenic mutations in RAS genes result in inactivation of p53 genes and resulting failure of activation of sestrin genes which results in increased<span>  </span>ROS (reactive oxygen species) levels and further oncogenic mutations.<span>  </span>This scenario is depicted in the 2007 paper <em><a href="http://cancerres.aacrjournals.org/cgi/content/abstract/67/10/4671">Repression of Sestrin Family Genes Contributes to Oncogenic Ras-Induced Reactive Oxygen Species Up-regulation and Genetic Instability</a></em>.<span>  </span>“Oncogenic mutations within RAS genes and inactivation of p53 are the most common events in cancer. Earlier, we reported that activated Ras contributes to chromosome instability, especially in p53-deficient cells. &#8212; Introduction of oncogenic RAS resulted in repression of transcription from sestrin family genes SESN1 and SESN3, which encode antioxidant modulators of peroxiredoxins. Inhibition of mRNAs from these genes in control cells by RNA interference substantially increased ROS levels and mutagenesis. &#8212; Thus, changes in expression of sestrins can represent an important determinant of genetic instability in neoplastic cells showing simultaneous dysfunctions of Ras and p53.”</span></p>
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		<title>BDNF gene – personality, mental balance, dementia, aging and epigenomic imprinting</title>
		<link>http://anti-agingfirewalls.com/2010/03/03/bdnf-gene-%e2%80%93-personality-mental-balance-dementia-aging-and-epigenomic-imprinting/</link>
		<comments>http://anti-agingfirewalls.com/2010/03/03/bdnf-gene-%e2%80%93-personality-mental-balance-dementia-aging-and-epigenomic-imprinting/#comments</comments>
		<pubDate>Wed, 03 Mar 2010 19:11:00 +0000</pubDate>
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		<description><![CDATA[BDNF stands for brain-derived neurotrophic factor, the protein generated by the BDNF gene, a substance that has been drawing a lot of attention recently in neuropsychiatric research circles.  I review some basic facts about BDNF here, recent research on how BDNF relates to personality, mental balance, and aging and, finally, current research on how BDNF [...]]]></description>
			<content:encoded><![CDATA[<p><font face="Calibri"><span style="font-size: 14pt">BDNF stands for </span><em><span style="font-size: 14pt"><a href="http://en.wikipedia.org/wiki/Brain-derived_neurotrophic_factor"><span style="color: purple">brain-derived neurotrophic factor</span></a></span></em><span style="font-size: 14pt">, the protein generated by the BDNF gene, a substance that has been drawing a lot of attention recently in neuropsychiatric research circles.  I review some basic facts about BDNF here, recent research on how BDNF relates to personality, mental balance, and aging and, finally, current research on how BDNF expression is conditioned by epigenomic imprints.</span></font></p>
<p><font face="Calibri"><span style="font-size: 14pt"></span><span style="font-family: 'Georgia','serif'; font-size: 12pt"></span></font><font face="Calibri"><strong><span style="font-size: 14pt">About BDNF</span></strong></font></p>
<p><font face="Calibri"><strong><span style="font-size: 14pt"></span></strong><span style="font-family: 'Georgia','serif'; font-size: 12pt"></span></font><font face="Calibri"><span style="font-size: 14pt">“</span><span style="font-size: 14pt" lang="EN">BDNF acts on certain <a href="http://en.wikipedia.org/wiki/Neuron" title="Neuron"><span style="color: blue">neurons</span></a> of the <a href="http://en.wikipedia.org/wiki/Central_nervous_system" title="Central nervous system"><span style="color: blue">central nervous system</span></a> and the peripheral nervous system, helping to support the survival of existing neurons, and encourage the growth and differentiation of new neurons and <a href="http://en.wikipedia.org/wiki/Synapse" title="Synapse"><span style="color: blue">synapses</span></a>.<sup><a href="http://en.wikipedia.org/wiki/Brain-derived_neurotrophic_factor#cite_note-pmid7700353-3"><span style="color: blue">[4]</span></a><a href="http://en.wikipedia.org/wiki/Brain-derived_neurotrophic_factor#cite_note-pmid11520916-4"><span style="color: blue">[5]</span></a></sup> In the brain, it is active in the <a href="http://en.wikipedia.org/wiki/Hippocampus" title="Hippocampus"><span style="color: blue">hippocampus</span></a>, <a href="http://en.wikipedia.org/wiki/Cerebral_cortex" title="Cerebral cortex"><span style="color: blue">cortex</span></a>, and basal <a href="http://en.wikipedia.org/wiki/Forebrain" title="Forebrain"><span style="color: blue">forebrain</span></a>—areas vital to learning, memory, and higher thinking.<sup><a href="http://en.wikipedia.org/wiki/Brain-derived_neurotrophic_factor#cite_note-pmid12719654-5"><span style="color: blue">[6]</span></a></sup> BDNF itself is important for <a href="http://en.wikipedia.org/wiki/Long-term_memory" title="Long-term memory"><span style="color: blue">long-term memory</span></a>(<a href="http://en.wikipedia.org/wiki/Brain-derived_neurotrophic_factor"><span style="color: purple">ref</span></a>).<sup><a href="http://en.wikipedia.org/wiki/Brain-derived_neurotrophic_factor#cite_note-pmid18263738-6"><span style="color: blue">[7]</span></a></sup> ”<sup> </sup> BDNF is an important <a href="http://en.wikipedia.org/wiki/Neurotrophin"><span style="color: purple">neurotrophic</span></a>, meaning that it plays an important role in neurogenesis, the important process in parts of the brain of neural stem cells differentiating into neurons. “Neurotrophins are a family of <a href="http://en.wikipedia.org/wiki/Protein" title="Protein"><span style="color: blue">proteins</span></a> that induce the survival,<sup><a href="http://en.wikipedia.org/wiki/Neurotrophin#cite_note-pmid16472198-0"><span style="color: blue">[1]</span></a></sup> development and function<sup><a href="http://en.wikipedia.org/wiki/Neurotrophin#cite_note-pmid16939974-1"><span style="color: blue">[2]</span></a></sup> of <a href="http://en.wikipedia.org/wiki/Neurons" title="Neurons"><span style="color: blue">neurons</span></a>. &#8212; Brain-derived neurotrophic factor (BDNF) is a neurotrophic factor found originally in the <a href="http://en.wikipedia.org/wiki/Brain" title="Brain"><span style="color: blue">brain</span></a>, but also found in the periphery. More specifically, it is a protein which has activity on certain neurons of the <a href="http://en.wikipedia.org/wiki/Central_nervous_system" title="Central nervous system"><span style="color: blue">central nervous system</span></a> and the peripheral nervous system; it helps to support the survival of existing neurons, and encourage the growth and differentiation of new neurons and <a href="http://en.wikipedia.org/wiki/Synapse" title="Synapse"><span style="color: blue">synapses</span></a> through <a href="http://en.wikipedia.org/wiki/Axonal" title="Axonal"><span style="color: blue">axonal</span></a> and <a href="http://en.wikipedia.org/wiki/Dendrite" title="Dendrite"><span style="color: blue">dendritic</span></a> sprouting. In the brain, it is active in the <a href="http://en.wikipedia.org/wiki/Hippocampus" title="Hippocampus"><span style="color: blue">hippocampus</span></a>, <a href="http://en.wikipedia.org/wiki/Cerebral_cortex" title="Cerebral cortex"><span style="color: blue">cortex</span></a>, <a href="http://en.wikipedia.org/wiki/Cerebellum" title="Cerebellum"><span style="color: blue">cerebellum</span></a>, and basal <a href="http://en.wikipedia.org/wiki/Forebrain" title="Forebrain"><span style="color: blue">forebrain</span></a>—areas vital to learning, memory, and higher thinking. BDNF was the second neurotrophic factor to be characterized, after NGF and before neurotrophin-3. &#8212; Despite its name, BDNF is actually found in a range of tissue and cell types, not just the brain. Expression can be seen in the retina, the CNS, motor neurons, the kidneys, and the prostate(<a href="http://en.wikipedia.org/wiki/Neurotrophin"><span style="color: purple">ref</span></a>).”</span></font></p>
<p><font face="Calibri"><span style="font-size: 14pt" lang="EN"></span><span style="font-family: 'Georgia','serif'; font-size: 12pt"></span></font><font face="Calibri"><strong><span style="font-size: 14pt">BDNF and mental balance</span></strong></font></p>
<p><font face="Calibri"><strong><span style="font-size: 14pt"></span></strong><span style="font-family: 'Georgia','serif'; font-size: 12pt"></span></font><font face="Calibri"><span style="font-size: 14pt" lang="EN">According to the December 30 2009 paper </span><em><span style="font-size: 14pt" lang="EN"><a href="http://www.ncbi.nlm.nih.gov/pubmed/20042999"><span style="color: purple">BDNF Val66Met is Associated with Introversion and Interacts with 5-HTTLPR to Influence Neuroticism</span></a></span></em><span style="font-size: 14pt" lang="EN">. “Brain-derived neurotrophic factor (BDNF) regulates synaptic plasticity and neurotransmission, and has been linked to neuroticism, a major risk factor for psychiatric disorders. A recent genome-wide association (GWA) scan, however, found the BDNF Val66Met polymorphism (rs6265) associated with extraversion but not with neuroticism. &#8212; ). Consistent with GWA results, we found that BDNF Met carriers were more introverted. &#8212; Our findings support the association between the BDNF Met variant and introversion and suggest </span><span style="font-size: 14pt">that BDNF interacts with the serotonin transporter gene to influence neuroticism.” </span></font></p>
<p><font face="Calibri"><span style="font-size: 14pt"></span><span style="font-family: 'Georgia','serif'; font-size: 12pt"></span></font><font face="Calibri"><span style="font-size: 14pt">Also, aberrant BDNF is implicated in memory loss, anxiety and schizophrenia. Again, the culprit gene variant seems to be Val66met.  According to the 2008 publication </span><em><span style="font-size: 14pt"><a href="http://www.ncbi.nlm.nih.gov/pubmed/18497103"><span style="color: purple">Impact of genetic variant BDNF (Val66Met) on brain structure and function</span></a></span></em><span style="font-size: 14pt">, “A common single-nucleotide polymorphism in the human brain-derived neurotrophic factor (BDNF) gene, a methionine (Met) substitution for valine (Val) at codon 66 (Val66Met) &#8212; A genetic variant BDNF may thus play a key role in genetic predispositions to anxiety and depressive disorders.”   Another relevant 2008 research publication is </span><em><span style="font-size: 14pt"><a href="http://www.ncbi.nlm.nih.gov/pubmed/19088493"><span style="color: purple">Meta-Analysis of the Brain-Derived Neurotrophic Factor (BDNF} Val66Met Polymorphism in Anxiety Disorders and Anxiety-Related Personality Traits</span></a>.</span></em></font></p>
<p><font face="Calibri"><em><span style="font-size: 14pt"></span></em><span style="font-family: 'Georgia','serif'; font-size: 12pt"></span></font><font face="Calibri"><span style="font-size: 14pt">Research study after research study have pointed to the importance of healthy expression of BDNF for long term memory including </span><em><span style="font-size: 14pt"><a href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2387254/"><span style="color: purple">BDNF: A Key Regulator for Protein-synthesis Dependent LTP and Long-term Memory?</span></a> </span></em><span style="font-size: 14pt">and</span><em><span style="font-size: 14pt"> <a href="http://www.ncbi.nlm.nih.gov/pubmed/15541709"><span style="color: purple">Regulation of late-phase LTP and long-term memory in normal and aging hippocampus: role of secreted proteins tPA and BDNF</span></a>.</span></em></font></p>
<p><font face="Calibri"><em><span style="font-size: 14pt"></span></em><strong><span style="font-family: 'Georgia','serif'; font-size: 24pt"></span></strong></font><span style="font-size: 14pt"><font face="Calibri">The association of BDNF VAL66Met with mental issues has been known for several years now.  According to the 2005 publication </font></span><span style="font-family: 'Georgia','serif'; font-size: 14pt"><a href="http://www.springerlink.com/content/1hjnkrv8epj4qjug/"><em><span style="font-family: 'Verdana','sans-serif'; color: purple; font-size: 11.5pt">Association of a functional BDNF polymorphism and anxiety-related personality traits</span></em></a></span><font face="Calibri"><span style="font-size: 12pt"> </span><span style="font-size: 14pt">“Converging lines of evidence point to brain-derived neurotrophic factor (BDNF) as a factor in the pathophysiology of depression. Recently, it was shown that the Val allele of the BDNF Val66Met substitution polymorphism showed a significant association with higher mean neuroticism scores of the NEO-Five Factor Inventory (NEO-FFI) in healthy subjects, and previous studies suggested the Val allele to be increased in bipolar disorder families. &#8212; Our findings support the hypothesis that anxiety- and depression-related personality traits are associated with the BDNF polymorphism although the explained variance is low.”</span></font></p>
<p><font face="Calibri"><span style="font-size: 14pt"></span><span style="font-family: 'Georgia','serif'; font-size: 12pt"></span></font><font face="Calibri"><span style="font-size: 14pt">Going back even a bit further, according to a 2003 NIMH </span><em><span style="font-size: 14pt"><a href="http://www.nimh.nih.gov/science-news/2003/human-gene-affects-memory.shtml"><span style="color: purple">research press release</span></a></span></em><span style="font-size: 14pt"> “NIH scientists have shown that a common gene variant influences memory for events in humans by altering a growth factor in the brain&#8217;s memory hub. On average, people with a particular version of the gene that codes for brain derived neurotrophic factor (BDNF) performed worse on tests of episodic memory—tasks like recalling what happened yesterday. They also showed differences in activation of the hippocampus, a brain area known to mediate memory, and signs of decreased neuronal health and interconnections. These effects are likely traceable to limited movement and secretion of BDNF within cells, according to the study, which reveals how a gene affects the normal range of human memory, and confirms that BDNF affects human hippocampal function much as it does animals&#8217;(<a href="http://www.nimh.nih.gov/science-news/2003/human-gene-affects-memory.shtml"><span style="color: purple">ref</span></a>).”  </span></font></p>
<p><font face="Calibri"><span style="font-size: 14pt"></span><span style="font-family: 'Georgia','serif'; font-size: 12pt"></span></font><font face="Calibri"><strong><span style="font-size: 14pt">The BDNF dementia and aging connection</span></strong></font></p>
<p><font face="Calibri"><strong><span style="font-size: 14pt"></span></strong><span style="font-family: 'Georgia','serif'; font-size: 12pt"></span></font><font face="Calibri"><span style="font-size: 14pt">Expression of BDNF is implicated in aging.  The 2008 study report </span><em><span style="font-size: 14pt"><a href="http://www.ncbi.nlm.nih.gov/pubmed/18958211"><span style="color: purple">Genetic contributions to age-related decline in executive function: a 10-year longitudinal study of COMT and BDNF polymorphisms</span></a></span></em><span style="font-size: 14pt"> says “Our results argue that &#8212; the Val/Val polymorphism for BDNF may promote faster rates of cognitive decay in old age. These results are discussed in relation to the role of BDNF in senescence and the transforming impact of the Met allele on cognitive function in old age.”</span></font></p>
<p><font face="Calibri"><span style="font-size: 14pt"></span><strong><span style="font-family: 'Georgia','serif'; font-size: 24pt"></span></strong></font><span style="font-size: 14pt"><font face="Calibri">In fact expression of BDNF is implicated in anti-aging.   According to a </font><a href="http://esciencenews.com/articles/2010/03/02/learning.keeps.brain.healthy.uci.researchers.find"><span style="color: purple"><font face="Calibri">news item published yesterday</font></span></a><font face="Calibri"> “</font></span><font face="Calibri"><span style="font-size: 14pt" lang="EN">UC Irvine neurobiologists are providing the first visual evidence that learning promotes brain health – and, therefore, that mental stimulation could limit the debilitating effects of aging on memory and the mind. Using a novel visualization technique they devised to study memory, a research team led by Lulu Chen and Christine Gall found that everyday forms of learning animate neuron receptors that help keep brain cells functioning at optimum levels. &#8212; These receptors are activated by a protein called brain-derived neurotrophic factor, which facilitates the growth and differentiation of the connections, or synapses, responsible for communication among neurons. BDNF is key in the formation of memories.” &#8212; &#8220;The findings confirm a critical relationship between learning and brain growth and point to ways we can amplify that relationship through possible future treatments,&#8221; says Chen, a graduate researcher in anatomy &amp; neurobiology.”  I have reported previously in this blog on the importance of mental exercise and learning for prevention of dementia and longevity.  <span style="color: black">See the blog posts </span></span><em><span style="color: black; font-size: 14pt" lang="EN"><a href="http://anti-agingfirewalls.com/2009/08/05/mental-exercise-and-dementia-in-the-news-again/"><span style="color: purple">Mental exercise and dementia in the news again</span></a></span></em><span style="color: black; font-size: 14pt" lang="EN"> and </span><em><span style="color: black; font-size: 14pt" lang="EN"><a href="http://anti-agingfirewalls.com/2009/02/11/brain-fitness-google-and-comprehending-longevity/"><span style="color: blue">Brain fitness, Google and comprehending longevity</span></a>. </span></em><span style="font-size: 14pt" lang="EN"> The new finding highlights the key role of BDNF expression in the process. </span></font></p>
<p><font face="Calibri"><span style="font-size: 14pt" lang="EN"></span><span style="font-family: 'Georgia','serif'; font-size: 12pt"></span></font><font face="Calibri"><span style="font-size: 14pt" lang="EN">I mentioned research on the use of neural stem cells as a source of BDNF in the blog entry </span><em><span style="font-size: 14pt" lang="EN"><a href="http://anti-agingfirewalls.com/2010/02/05/human-embryonic-stem-cells-and-alzheimer%e2%80%99s-disease/"><span style="color: purple">Human embryonic stem cells and Alzheimer’s disease</span></a></span></em><span style="font-size: 14pt" lang="EN"> quoting the 2009 research report </span><em><span style="font-size: 14pt" lang="EN"><a href="http://www.pnas.org/content/106/32/13594.full?sid=d0859f9a-1534-4f5c-af1b-85616d187789#aff-1"><span style="color: blue">Neural stem cells improve cognition via BDNF in a transgenic model of Alzheimer disease</span></a>. “</span></em><span style="font-size: 14pt" lang="EN">Additionally, the improvement in memory and the increase in synaptic density observed after injection of neural stem cells were found to be mediated, at least in part, by the neurotrophic factor BDNF, which is secreted from the transplanted cells. GRNOPC1 has been found to secrete BDNF as well as other neurotrophic factors(<a href="http://www.genengnews.com/news/bnitem.aspx?name=73915930&amp;nc=1"><span style="color: blue">ref</span></a>).”  “Taken together, our findings demonstrate that neural stem cells can ameliorate complex behavioral deficits associated with widespread Alzheimer disease pathology via BDNF(<a href="http://www.pnas.org/content/106/32/13594.full?sid=d0859f9a-1534-4f5c-af1b-85616d187789#aff-1"><span style="color: blue">ref</span></a>).”</span></font></p>
<p><font face="Calibri"><span style="font-size: 14pt" lang="EN"></span><span style="font-family: 'Georgia','serif'; font-size: 12pt"></span></font><font face="Calibri"><strong><span style="font-size: 14pt" lang="EN">The BDNF epigenetics connection – DNA methylation and chromatin remodeling</span></strong></font></p>
<p><font face="Calibri"><strong><span style="font-size: 14pt" lang="EN"></span></strong><span style="font-family: 'Georgia','serif'; font-size: 12pt"></span></font><font face="Calibri"><span style="font-size: 14pt" lang="EN">Recent studies have gone beyond looking at the Val66Met polymorphism to identifying another reason for unwanted downregulation of BDNF expression – BDNF gene promoter methylation.  The 2010 paper </span><em><span style="font-size: 14pt" lang="EN"><a href="http://archpsyc.ama-assn.org/cgi/content/abstract/67/3/258?etoc"><span style="color: purple">Increased BDNF Promoter Methylation in the Wernicke Area of Suicide Subjects</span></a></span></em><span style="font-size: 14pt" lang="EN"> points to downregulation of BDNF activity due to DNA methylation being observed in suicide subjects.  The paper reports: </span><span style="color: black; font-size: 14pt" lang="EN">Context </span><span style="color: black; font-size: 14pt" lang="EN"> Brain-derived neurotrophic factor (BDNF) plays<sup> </sup>a pivotal role in the pathophysiology of suicidal behavior and<sup> </sup></span><em><span style="color: black; font-size: 14pt" lang="EN">BDNF</span></em><span style="color: black; font-size: 14pt" lang="EN"> levels are decreased in the brain and plasma of suicide<sup> </sup>subjects. So far, the mechanisms leading to downregulation of<sup> </sup></span><em><span style="color: black; font-size: 14pt" lang="EN">BDNF</span></em><span style="color: black; font-size: 14pt" lang="EN"> expression are poorly understood.<sup>  </sup></span><span style="color: black; font-size: 14pt" lang="EN">Objectives </span><span style="color: black; font-size: 14pt" lang="EN"> To test the hypothesis that alterations of<sup> </sup>DNA methylation could be involved in the dysregulation of </span><em><span style="color: black; font-size: 14pt" lang="EN">BDNF</span></em><sup><span style="color: black; font-size: 14pt" lang="EN"> </span></sup><span style="color: black; font-size: 14pt" lang="EN">gene expression in the brain of suicide subjects.<sup>  </sup></span><span style="color: black; font-size: 14pt" lang="EN">Design </span><span style="color: black; font-size: 14pt" lang="EN"> Three independent quantitative methylation techniques<sup> </sup>were performed on postmortem samples of brain tissue. </span><em><span style="color: black; font-size: 14pt" lang="EN">BDNF</span></em><span style="color: black; font-size: 14pt" lang="EN"> messenger<sup> </sup>RNA levels were determined by quantitative real-time polymerase<sup> </sup>chain reaction.<sup> &#8211;</sup>.<sup> </sup></span><span style="color: black; font-size: 14pt" lang="EN">Main Outcome Measures </span><span style="color: black; font-size: 14pt" lang="EN"> The DNA methylation degree at </span><em><span style="color: black; font-size: 14pt" lang="EN">BDNF</span></em><sup><span style="color: black; font-size: 14pt" lang="EN"> </span></sup><span style="color: black; font-size: 14pt" lang="EN">promoter IV and the genome-wide DNA methylation levels in the<sup> </sup>brain&#8217;s Wernicke area.<sup> </sup></span><span style="color: black; font-size: 14pt" lang="EN">Results </span><span style="color: black; font-size: 14pt" lang="EN"> Postmortem brain samples from suicide subjects<sup> </sup>showed a statistically significant increase of DNA methylation<sup> </sup>at specific CpG sites in </span><em><span style="color: black; font-size: 14pt" lang="EN">BDNF</span></em><span style="color: black; font-size: 14pt" lang="EN"> promoter/exon IV compared with<sup> </sup>nonsuicide control subjects (</span><em><span style="color: black; font-size: 14pt" lang="EN">P</span></em><span style="color: black; font-size: 14pt" lang="EN"> &lt; .001). &#8212;  Higher methylation degree corresponded to lower </span><em><span style="color: black; font-size: 14pt" lang="EN">BDNF</span></em><sup><span style="color: black; font-size: 14pt" lang="EN"> </span></sup><span style="color: black; font-size: 14pt" lang="EN">messenger RNA levels.<sup>  </sup></span><span style="color: black; font-size: 14pt" lang="EN">Conclusions </span><span style="color: black; font-size: 14pt" lang="EN"> </span><em><span style="color: black; font-size: 14pt" lang="EN">BDNF</span></em><span style="color: black; font-size: 14pt" lang="EN"> promoter/exon IV is frequently hypermethylated<sup> </sup>in the Wernicke area of the postmortem brain of suicide subjects<sup> </sup>irrespective of genome-wide methylation levels, indicating that<sup> </sup>a gene-specific increase in DNA methylation could cause or contribute<sup> </sup>to the downregulation of </span><em><span style="color: black; font-size: 14pt" lang="EN">BDNF</span></em><span style="color: black; font-size: 14pt" lang="EN"> expression in suicide subjects.<sup> </sup>The reported data reveal a novel link between epigenetic alteration<sup> </sup>in the brain and suicidal behavior.”  It is tempting to hypothesize that BDNF methylation is a causal factor in suicides but the paper does not go that far.<sup> </sup></span></font></p>
<p><font face="Calibri"><span style="color: black; font-size: 14pt" lang="EN"></span><span style="font-family: 'Georgia','serif'; font-size: 12pt"></span></font><font face="Calibri"><span style="color: black; font-size: 14pt" lang="EN">The 2008 paper </span><em><span style="color: black; font-size: 14pt" lang="EN"><a href="http://www.jneurosci.org/cgi/content/abstract/28/42/10576"><span style="color: purple">Epigenetic regulation of BDNF gene transcription in the consolidation of fear memory</span></a> </span></em><span style="color: black; font-size: 14pt" lang="EN">reports: Long-term </span><span style="color: black; font-size: 14pt" lang="EN">memory</span><span style="color: black; font-size: 14pt" lang="EN"> formation requires selective changes </span><span style="color: black; font-size: 14pt" lang="EN">in</span><span style="color: black; font-size: 14pt" lang="EN"> </span><span style="color: black; font-size: 14pt" lang="EN">gene</span><span style="color: black; font-size: 14pt" lang="EN"> expression. Here, we determ</span><span style="color: black; font-size: 14pt" lang="EN">in</span><span style="color: black; font-size: 14pt" lang="EN">ed </span><span style="color: black; font-size: 14pt" lang="EN">the</span><span style="color: black; font-size: 14pt" lang="EN"> contribution </span><span style="color: black; font-size: 14pt" lang="EN">of</span><span style="color: black; font-size: 14pt" lang="EN"> chromat</span><span style="color: black; font-size: 14pt" lang="EN">in</span><span style="color: black; font-size: 14pt" lang="EN"> remodel</span><span style="color: black; font-size: 14pt" lang="EN">in</span><span style="color: black; font-size: 14pt" lang="EN">g to learn</span><span style="color: black; font-size: 14pt" lang="EN">in</span><span style="color: black; font-size: 14pt" lang="EN">g-</span><span style="color: black; font-size: 14pt" lang="EN">in</span><span style="color: black; font-size: 14pt" lang="EN">duced changes </span><span style="color: black; font-size: 14pt" lang="EN">in</span><span style="color: black; font-size: 14pt" lang="EN"> bra</span><span style="color: black; font-size: 14pt" lang="EN">in</span><span style="color: black; font-size: 14pt" lang="EN">-derived neurotrophic factor (</span><span style="color: black; font-size: 14pt" lang="EN">bdnf</span><span style="color: black; font-size: 14pt" lang="EN">) </span><span style="color: black; font-size: 14pt" lang="EN">gene</span><span style="color: black; font-size: 14pt" lang="EN"> expression </span><span style="color: black; font-size: 14pt" lang="EN">in</span><span style="color: black; font-size: 14pt" lang="EN"> </span><span style="color: black; font-size: 14pt" lang="EN">the</span><span style="color: black; font-size: 14pt" lang="EN"> adult hippocampus. Contextual </span><span style="color: black; font-size: 14pt" lang="EN">fear</span><span style="color: black; font-size: 14pt" lang="EN"> learn</span><span style="color: black; font-size: 14pt" lang="EN">in</span><span style="color: black; font-size: 14pt" lang="EN">g </span><span style="color: black; font-size: 14pt" lang="EN">in</span><span style="color: black; font-size: 14pt" lang="EN">duced differential </span><span style="color: black; font-size: 14pt" lang="EN">regulation</span><span style="color: black; font-size: 14pt" lang="EN"> </span><span style="color: black; font-size: 14pt" lang="EN">of</span><span style="color: black; font-size: 14pt" lang="EN"> exon-specific </span><span style="color: black; font-size: 14pt" lang="EN">bdnf</span><span style="color: black; font-size: 14pt" lang="EN"> mRNAs (I, IV, VI, IX) that was associated with changes </span><span style="color: black; font-size: 14pt" lang="EN">in</span><span style="color: black; font-size: 14pt" lang="EN"> </span><span style="color: black; font-size: 14pt" lang="EN">bdnf</span><span style="color: black; font-size: 14pt" lang="EN"> DNA methylation and altered local chromat</span><span style="color: black; font-size: 14pt" lang="EN">in</span><span style="color: black; font-size: 14pt" lang="EN"> structure. &#8212; altered DNA methylation is sufficient to drive differential </span><span style="color: black; font-size: 14pt" lang="EN">bdnf</span><span style="color: black; font-size: 14pt" lang="EN"> transcript </span><span style="color: black; font-size: 14pt" lang="EN">regulation</span><span style="color: black; font-size: 14pt" lang="EN"> </span><span style="color: black; font-size: 14pt" lang="EN">in</span><span style="color: black; font-size: 14pt" lang="EN"> </span><span style="color: black; font-size: 14pt" lang="EN">the</span><span style="color: black; font-size: 14pt" lang="EN"> hippocampus &#8212; .  </span><span style="color: black; font-size: 14pt" lang="EN">The</span><span style="color: black; font-size: 14pt" lang="EN">se results suggest </span><span style="color: black; font-size: 14pt" lang="EN">epigenetic</span><span style="color: black; font-size: 14pt" lang="EN"> modification </span><span style="color: black; font-size: 14pt" lang="EN">of</span><span style="color: black; font-size: 14pt" lang="EN"> </span><span style="color: black; font-size: 14pt" lang="EN">the</span><span style="color: black; font-size: 14pt" lang="EN"> </span><span style="color: black; font-size: 14pt" lang="EN">bdnf</span><span style="color: black; font-size: 14pt" lang="EN"> </span><span style="color: black; font-size: 14pt" lang="EN">gene</span><span style="color: black; font-size: 14pt" lang="EN"> as a mechanism for is</span><span style="color: black; font-size: 14pt" lang="EN">of</span><span style="color: black; font-size: 14pt" lang="EN">orm-specific </span><span style="color: black; font-size: 14pt" lang="EN">gene</span><span style="color: black; font-size: 14pt" lang="EN"> readout dur</span><span style="color: black; font-size: 14pt" lang="EN">in</span><span style="color: black; font-size: 14pt" lang="EN">g </span><span style="color: black; font-size: 14pt" lang="EN">memory</span><span style="color: black; font-size: 14pt" lang="EN"> </span><span style="color: black; font-size: 14pt" lang="EN">consolidation</span><span style="color: black; font-size: 14pt" lang="EN">.”</span></font></p>
<p><font face="Calibri"><span style="color: black; font-size: 14pt" lang="EN"></span><span style="font-family: 'Georgia','serif'; font-size: 12pt"></span></font><font face="Calibri"><span style="color: black; font-size: 14pt">Going back a bit earlier there was the 2005 paper<strong> </strong></span><em><span style="color: black; font-size: 14pt"><a href="http://www.ncbi.nlm.nih.gov/pubmed/16054725"><span style="color: purple">Regional expression of brain derived neurotrophic factor (BDNF) is correlated with dynamic patterns of promoter methylation in the developing mouse forebrain</span></a></span></em><strong><span style="color: black; font-size: 14pt">. </span></strong><span style="color: black; font-size: 14pt">“These studies demonstrate that DNA methylation of this regulatory region may be an important mechanism controlling differential expression of BDNF during forebrain development.”</span></font></p>
<p><font face="Calibri"><span style="color: black; font-size: 14pt"></span><strong><span style="font-family: 'Georgia','serif'; font-size: 24pt"></span></strong></font><font face="Calibri"><span style="font-size: 14pt">Early-life experiences or experiences of parents or grandparents can create changes in BDNF DNA methylation which affect learning, attitude or mental stability, as pointed out in the 2009 publication </span><em><span style="font-size: 14pt"><a href="http://www.journals.elsevierhealth.com/periodicals/bps/article/S0006-3223(08)01530-8/abstract"><span style="color: purple">Lasting Epigenetic Influence of Early-Life Adversity on the BDNF Gene</span></a></span></em><span style="font-size: 14pt">.  “</span><span style="font-size: 14pt">Background: </span><span style="font-size: 14pt">Childhood maltreatment and early trauma leave lasting imprints on neural mechanisms of cognition and emotion. With a rat model of infant maltreatment by a caregiver, we investigated whether early-life adversity leaves lasting epigenetic marks at the brain-derived neurotrophic factor (</span><em><span style="font-size: 14pt">BDNF</span></em><span style="font-size: 14pt">) gene in the central nervous system.  </span><span style="font-size: 14pt">Methods: </span><span style="font-size: 14pt">During the first postnatal week, we exposed infant rats to stressed caretakers that predominately displayed abusive behaviors. We then assessed DNA methylation patterns and gene expression throughout the life span as well as DNA methylation patterns in the next generation of infants.  </span><span style="font-size: 14pt">Results: </span><span style="font-size: 14pt">Early maltreatment produced persisting changes in methylation of </span><em><span style="font-size: 14pt">BDNF</span></em><span style="font-size: 14pt"> DNA that caused altered </span><em><span style="font-size: 14pt">BDNF</span></em><span style="font-size: 14pt"> gene expression in the adult prefrontal cortex. Furthermore, we observed altered </span><em><span style="font-size: 14pt">BDNF</span></em><span style="font-size: 14pt"> DNA methylation in offspring of females that had previously experienced the maltreatment regimen.  </span><span style="font-size: 14pt">Conclusions: </span><span style="font-size: 14pt">These results highlight an epigenetic molecular mechanism potentially underlying lifelong and transgenerational perpetuation of changes in gene expression and behavior incited by early abuse and neglect.”</span></font></p>
<p><font face="Calibri"><span style="font-size: 14pt"></span><span style="font-family: 'Georgia','serif'; font-size: 12pt"></span></font><font face="Calibri"><strong><span style="font-size: 14pt">Putting it together</span></strong></font></p>
<p><font face="Calibri"><strong><span style="font-size: 14pt"></span></strong><span style="font-family: 'Georgia','serif'; font-size: 12pt"></span></font><font face="Calibri"><span style="font-size: 14pt">There are many more relevant BDNF literature citations out there, but these are sufficient to make certain key points:</span></font></p>
<p><font face="Calibri"><span style="font-size: 14pt"></span><span style="font-family: 'Georgia','serif'; font-size: 12pt"></span></font><span style="font-family: Symbol; font-size: 14pt">·</span><span style="font-family: 'Times New Roman','serif'; font-size: 7pt">        </span><font face="Calibri"><span style="font-size: 14pt">Healthy BDNF gene expression is important for mental health, learning, memory, and preservation of cognitive capability with aging</span></font></p>
<p><font face="Calibri"><span style="font-size: 14pt"></span><span style="font-family: 'Georgia','serif'; font-size: 12pt"></span></font><span style="font-family: Symbol; font-size: 14pt">·</span><span style="font-family: 'Times New Roman','serif'; font-size: 7pt">        </span><font face="Calibri"><span style="font-size: 14pt">One thing that can get in the way of healthy BDNF gene expression is the Val66Met polymorphism in the BDNF gene, a genetic condition.</span></font></p>
<p><font face="Calibri"><span style="font-size: 14pt"></span><span style="font-family: 'Georgia','serif'; font-size: 12pt"></span></font><span style="font-family: Symbol; font-size: 14pt">·</span><span style="font-family: 'Times New Roman','serif'; font-size: 7pt">        </span><font face="Calibri"><span style="font-size: 14pt">Another thing that can get in the way of healthy BDNF gene expression is gene methylation, a type of epigenetic modification that can be induced by experience and that is possibly inheritable.  We have all known that early experience shapes the character.  We now know that one way that shaping takes place is molecularly via methylation of the BDNF gene.</span></font></p>
<p><font face="Calibri"><span style="font-size: 14pt"></span><span style="font-family: 'Georgia','serif'; font-size: 12pt"></span></font><span style="font-family: Symbol; font-size: 14pt">·</span><span style="font-family: 'Times New Roman','serif'; font-size: 7pt">        </span><font face="Calibri"><span style="font-size: 14pt">Certain stem cells like those in <span style="color: #35332f">Geron’s proprietary </span></span><span style="font-size: 14pt" lang="EN">hESC-based GRNOPC1 </span><span style="font-size: 14pt">line secrete BDNF and offer one means for introducing BDNF expression into tissues.</span></font><span style="font-family: 'Georgia','serif'; font-size: 12pt"></span></p>
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		<title>DNA repair cleanup failure – a root cause for cancers?</title>
		<link>http://anti-agingfirewalls.com/2010/03/01/dna-repair-cleanup-failure-%e2%80%93-a-root-cause-for-cancers/</link>
		<comments>http://anti-agingfirewalls.com/2010/03/01/dna-repair-cleanup-failure-%e2%80%93-a-root-cause-for-cancers/#comments</comments>
		<pubDate>Mon, 01 Mar 2010 19:31:38 +0000</pubDate>
		<dc:creator>admin</dc:creator>
		
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		<description><![CDATA[New research suggests that the answer to the question is quite possibly.  This is a rather technial subject and I will get into it in stages.  Finally, I speculate a little on the possible importance of the new research.
Repair mechanisims for double-strand breaks in DNA
In the course of a normal good day you may have [...]]]></description>
			<content:encoded><![CDATA[<p><span style="font-size: 14pt"><font face="Calibri">New research suggests that the answer to the question is <em>quite possibly</em>.<span>  </span>This is a rather technial subject and I will get into it in stages.<span>  </span>Finally, I speculate a little on the possible importance of the <span style="line-height: 115%; font-family: 'Calibri','sans-serif'; font-size: 14pt">new research</span>.</font></span></p>
<p><span style="font-size: 14pt"></span><font face="Calibri"><strong><span style="font-size: 14pt">Repair mechanisims for double-strand breaks in DNA</span></strong><strong><span style="font-size: 14pt" lang="EN"></span></strong></font></p>
<h1 style="line-height: normal; margin: 12pt 0in 3pt 0.25in; background: white"><span style="font-family: 'Calibri','sans-serif'; font-size: 14pt; font-weight: normal">In the course of a normal good day you may have a million or more events of DNA damage occur in your body.<span>  </span>If you are exposed to ionizing radiation or any substance that creates large numbers of free radicals or if you have certain disease processes like Alzheimer’s going on, the number of DNA damage events could be many times higher.<span>  </span>The kinds of DNA damage can be of multiple types(<a href="http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=mcb&amp;part=A3236&amp;rendertype=table&amp;id=A3236"><font color="#800080">ref</font></a>).<span>  </span>In this blog entry I am concerned with one particular important kind, <em><a href="http://theoncologist.alphamedpress.org/cgi/content/full/10/5/361"><font color="#800080">double-strand breaks</font></a> </em>(DSBs), breaks that can occur naturally in cell differentiation or that are created by radiation and certain chemicals.<span>  </span><span> </span>“The current view is that most spontaneous chromosomal rearrangements result from DSBs created mainly during DNA replication as a result of broken, stalled or collapsed replication forks(<a href="http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000852"><font color="#800080">ref</font></a>).”</span><em><span style="font-size: 13pt; font-weight: normal"><font face="Cambria"> </font></span></em><span style="font-family: 'Calibri','sans-serif'; font-size: 14pt; font-weight: normal"><span> </span></span></h1>
<h1 style="line-height: normal; margin: 12pt 0in 3pt 0.25in; background: white"><span style="font-family: 'Calibri','sans-serif'; font-size: 14pt; font-weight: normal">Because these breaks completely threaten genomic integrity, evolution has provided us with a number of sophisticated approaches for automatic DNA repair.<span>  </span>See </span><em><span style="font-family: 'Calibri','sans-serif'; font-size: 14pt; font-weight: normal"><a href="http://www.ncbi.nlm.nih.gov/pubmed/18772547?ordinalpos=1&amp;itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_SingleItemSupl.Pubmed_Discovery_RA&amp;linkpos=5&amp;log$=relatedreviews&amp;logdbfrom=pubmed"><font color="#800080">Dancing on damaged chromatin: functions of ATM and the RAD50/MRE11/NBS1 complex in cellular responses to DNA damage</font></a></span></em><span style="font-family: 'Calibri','sans-serif'; font-size: 14pt; font-weight: normal">.<span>  </span>“</span><span style="font-family: 'Calibri','sans-serif'; font-size: 14pt; font-weight: normal">In order to preserve and protect genetic information, eukaryotic cells have developed a signaling or communications network to help the cell respond to DNA damage, and ATM and NBS1 are key players in this network. ATM is a protein kinase which is activated immediately after a DNA double strand break (DSB) is formed, and the resulting signal cascade generated in response to cellular DSBs is regulated by post-translational protein modifications such as phosphorylation and acetylation. In addition, to ensure the efficient functioning of DNA repair and cell cycle checkpoints, the highly ordered structure of eukaryotic chromatin must be appropriately altered to permit access of repair-related factors to DNA. These alterations are termed chromatin remodeling.”</span><span style="font-family: 'Calibri','sans-serif'; font-size: 14pt; font-weight: normal"></span></h1>
<h1 style="line-height: normal; margin: 12pt 0in 3pt 0.25in; background: white"><span style="font-family: 'Calibri','sans-serif'; font-size: 14pt; font-weight: normal">Failure to repair double-strand DNA breaks or faulty repairs can have serious consequences.<span>  </span>As pointed out in the review publication <em><a href="http://www.ncbi.nlm.nih.gov/pubmed/12118342?ordinalpos=1&amp;itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_SingleItemSupl.Pubmed_Discovery_RA&amp;linkpos=5&amp;log$=relatedreviews&amp;logdbfrom=pubmed"><font color="#800080">Misrepair of radiation-induced DNA double-strand breaks and its relevance for tumorigenesis and cancer treatment</font></a>: </em><span> </span>“The faithful repair of DNA double-strand breaks (DSBs) is probably one of the most critical tasks for a cell in order to maintain its genomic integrity since these lesions may lead to chromosome breaks or rearrangements, mutations, cell death or cancer. DSBs can arise spontaneously during normal cellular DNA metabolism or may be induced by exogenous agents such as ionizing radiation. To overcome the danger that emanates from these lesions, eukaryotic cells have evolved specific pathways for processing DSBs. &#8212; <span> </span>”<span>  </span>Moreover, it is thought that an impaired capacity to repair double-strand breaks can lead to chromosome Instability (CIN) “ &#8212; a genome phenotype that involves changes in chromosome number or structure, and accounts for most malignancies(<a href="http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000852"><font color="#800080">ref</font></a>).”</span></h1>
<h1 style="line-height: normal; margin: 12pt 0in 3pt 0.25in; background: white"><span style="font-family: 'Calibri','sans-serif'; font-size: 14pt; font-weight: normal"></span></h1>
<p><span style="line-height: 115%; font-size: 14pt"></span><span style="line-height: 115%; font-size: 14pt"><span style="line-height: 115%; font-size: 14pt"><font face="Calibri">There are two general repair pathways for double strand breaks, homologous recombination (HR) and non-homologous end joining (NHEJ). “Defects in either repair pathway result in high frequencies of genomic instability</font><a href="http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000852#pgen.1000852-Kolodner1"><font face="Calibri"><span style="color: windowtext; text-decoration: none; text-underline: none">[</span><span>4</span><span style="color: windowtext; text-decoration: none; text-underline: none">]</span></font></a><font face="Calibri">. The HR pathway utilizes a homologous sequence to faithfully restore the DNA continuity at the DSB</font><a href="http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000852#pgen.1000852-Symington1"><font face="Calibri"><span style="color: windowtext; text-decoration: none; text-underline: none">[</span><span>5</span><span style="color: windowtext; text-decoration: none; text-underline: none">]</span></font></a><font face="Calibri">. In contrast, NHEJ is a mechanism able to join DNA ends with no or minimal homology </font><a href="http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000852#pgen.1000852-Aylon1"><font face="Calibri"><span style="color: windowtext; text-decoration: none; text-underline: none">[</span><span>6</span><span style="color: windowtext; text-decoration: none; text-underline: none">] </span></font></a><font face="Calibri">(</font><a href="http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000852#s5"><font face="Calibri">ref</font></a><font face="Calibri">).” <span> </span>“Non-homologous DNA end-joining (NHEJ)&#8211;the main pathway for repairing double-stranded DNA breaks&#8211;functions throughout the cell cycle to repair such lesions. Defects in NHEJ result in marked sensitivity to ionizing radiation and ablation of lymphocytes, which rely on NHEJ to complete the rearrangement of antigen-receptor genes. NHEJ is typically imprecise, a characteristic that is useful for immune diversification in lymphocytes, but which might also contribute to some of the genetic changes that underlie cancer and ageing(</font><a href="http://www.ncbi.nlm.nih.gov/pubmed/14506474?dopt=Abstract"><font face="Calibri" color="#800080">ref</font></a><font face="Calibri">).”</font></span></span></p>
<h1 style="line-height: normal; margin: 12pt 0in 3pt 0.25in; background: white"><span style="font-family: 'Calibri','sans-serif'; font-size: 14pt; font-weight: normal">The DNA repair pathways are complex but one gene/protein important both to faithful cell division and DNA repair appears to be Mms22, studied originally in budding yeast strains(<a href="http://www.genetics.org/cgi/content/abstract/177/1/47"><font color="#800080">ref</font></a>)(<span style="line-height: 115%; font-family: 'Calibri','sans-serif'; font-size: 14pt"><a href="http://www.ncbi.nlm.nih.gov/pubmed/18321796"><strong><font color="#800080">ref</font></strong></a></span>).<span>  </span></span></h1>
<p><span style="font-size: 14pt"></span><span style="font-size: 14pt"><strong><span style="font-size: 14pt"><font face="Calibri">Roles of proteasomes in repairing double-strand DNA breaks</font></span></strong></span></p>
<p><span style="font-size: 14pt"><strong><span style="font-size: 14pt"></span></strong><font face="Calibri"><span style="font-size: 14pt">I found the new February 2010 publication <em><a href="http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000852"><font color="#800080">Proteasome Nuclear Activity Affects Chromosome Stability by Controlling the Turnover of Mms22, a Protein Important for DNA Repair</font></a> </em>to be difficult to decipher at first.<span>  </span>So, I need to proceed slowly here.<span>  </span><span> </span><em><a href="http://en.wikipedia.org/wiki/Proteasome"><font color="#800080">Proteasomes</font></a></em> are tiny protein recycling factories that live in cells, either in the cytoplasm or in the nucleus.<span>  </span>Actually they are sizeable protein complexes shaped like drums that breakup unneeded proteins (ones that are damaged, misfolded or used for short-term purposes as part of cell maintenance) using a chemical process called </span><span style="font-size: 14pt" lang="EN"><a href="http://en.wikipedia.org/wiki/Proteolysis" title="Proteolysis">proteolysis</a>.<span>  </span>“The degradation process yields <a href="http://en.wikipedia.org/wiki/Peptide" title="Peptide">peptides</a> of about seven to eight <a href="http://en.wikipedia.org/wiki/Amino_acid" title="Amino acid">amino acids</a> long, which can then be further degraded into amino acids and used in <a href="http://en.wikipedia.org/wiki/Protein_biosynthesis" title="Protein biosynthesis">synthesizing</a> new proteins.<sup><a href="http://en.wikipedia.org/wiki/Proteasome#cite_note-Lodish-1">[2]</a></sup> Proteins are tagged for degradation with a considerably small protein called <a href="http://en.wikipedia.org/wiki/Ubiquitin" title="Ubiquitin"><font color="#800080">ubiquitin</font></a>.<span>  </span>&#8211; The proteasomal degradation pathway is essential for many cellular processes, including the <a href="http://en.wikipedia.org/wiki/Cell_cycle" title="Cell cycle">cell cycle</a>, the regulation of <a href="http://en.wikipedia.org/wiki/Gene_expression" title="Gene expression">gene expression</a>, and responses to <a href="http://en.wikipedia.org/wiki/Oxidative_stress" title="Oxidative stress">oxidative stress</a>(<a href="http://en.wikipedia.org/wiki/Proteasome"><font color="#800080">ref</font></a>).”<span>  </span></span></font></span></p>
<p><span style="font-size: 14pt"><font face="Calibri"><span style="font-size: 14pt" lang="EN"><span></span></span></font><span style="font-size: 14pt" lang="EN"><font face="Calibri">For a long time is was thought that<span>  </span>DNA duplication and repair had nothing to do with the proteasomes, nothing anymore than an effective pressure cooker has to do with a garbage dispose-all.<span>  </span>The new research says “not so.”<span>  </span>In fact, DNA repair might not be completed because of defects in proteasome machinery.<span>  </span></font></span></span></p>
<p><span style="font-size: 14pt"><span style="font-size: 14pt" lang="EN"><font face="Calibri"><span></span>The </font><a href="http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000852"><font face="Calibri" color="#800080">new publication</font></a><font face="Calibri"> cites impressive research indicating that what goes on when a double-strand DNA break occurs includes 1.<span>  </span></font></span><span style="font-size: 14pt"><font face="Calibri">Mms22 gets attracted to the double break site where it does its repair job.<span>  </span>2.<span>  </span>In the process Mms22 also gets highly ubiquinated, e.g. several morsels of ubiquitin are attached to it and thus it becomes a target for proteasomal degradation, 3.<span>  </span>Certain proteasomes (“The 26S proteasome comprises the 20S core particle (CP) and the 19S regulatory particle (RP), which represent the base and lid substructures, respectively(</font><a href="http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000852"><font face="Calibri" color="#800080">ref</font></a><font face="Calibri">).”</font></span><font face="Calibri"><span style="font-size: 13pt">) </span><span style="font-size: 14pt">are also attracted to the DNA break site, probably by accumulated ubiquinated<strong> </strong>Mms22, where they capture and set out to degrade the Mms22.<span>  </span>4.<span>  </span>If degradation is successful the DNA repair is completed, and 5.<span>  </span>If degradation is not successful the DNA break repair is not completed and the cell goes into prolonged cell-cycle arrest.<span>  </span></span></font></span></p>
<p><span style="font-size: 14pt"><font face="Calibri"><span style="font-size: 14pt">“Indeed, we show that DNA damage results in Mms22 recruitment to the chromatin bound fraction &#8211;. Importantly, our results also show that recruitment of Mms22 to chromatin is not sufficient for the normal course of DNA repair, and that an essential step is a proteasome-mediated degradation of Mms22. These results thus identify for the first time a proteasome target that links proteasomal nuclear activity and DNA double strand break repair(<a href="http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000852"><font color="#800080">ref</font></a>).”<span>  </span>Also, “In this regard, proteasome inhibition in combination with DNA damage probably results in the accumulation of many proteins besides Mms22, which altogether may lead to the impaired recovery from the cell cycle arrest(<a href="http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000852"><font color="#800080">ref</font></a>).”</span></font><span style="font-size: 14pt"><font face="Calibri">The authors of the paper put it this way: “DNA damage results in a SCFrtt101 E3 ubiquitin ligase-dependent accumulation of the ubiquitinated form of Mms22 on chromatin that, as suggested above, plays a role in dealing with DNA damage. Subsequent degradation of ubiquitinated Mms22 by the proteasome is an important step in completion of the DNA repair process. Once Mms22 executes its function in DNA repair it becomes a target for degradation by the UPS (ubiquitin proteasome system), and is removed from chromatin. <span> </span>Failure to degrade Mms22 results in impaired DNA repair and prolonged cell cycle arrest(</font><a href="http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000852"><font face="Calibri" color="#800080">ref</font></a><font face="Calibri">).”</font></span></span></p>
<p><span style="font-size: 14pt"><span style="font-size: 14pt"></span><span style="font-size: 14pt"><font face="Calibri">The authors point the finger for failure in double strand repair (and consequently for chromosome instability and carcinogenesis) to defects in the proteasomes: “In our current work, we show that mutations in the proteasome subunits rpn5ΔC and pup2, which cause nuclear mislocalization, are associated with impaired DSB (double-strand break) repair. All other proteasomal Ts mutants tested were sensitive to drugs inducing DSBs, implying that the proteolytic activity of the proteasome is required for DNA repair(</font><a href="http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000852"><font face="Calibri" color="#800080">ref</font></a><font face="Calibri">).”<span>  </span>As mentioned, the mutations can cause the proteasomes of concern to locate outside of the cell nucleus where they normally reside making them unavailable to ubiquinated Mms22.</font></span></span></p>
<p><span style="font-size: 14pt"><span style="font-size: 14pt"></span><span style="font-size: 14pt"><font face="Calibri">The research work described was done using strains of yeast (Saccharomyces cerevisiae) but is thought to be applicable to humans because of </font><a href="http://en.wikipedia.org/wiki/Orthologs"><font face="Calibri" color="#800080">orthologs</font></a><font face="Calibri"> between human and yeast genes(</font><a href="http://www.ncbi.nlm.nih.gov/pubmed/17360454"><font face="Calibri" color="#800080">ref</font></a><font face="Calibri">)(</font><a href="http://www.google.com/search?pz=1&amp;cf=all&amp;ned=us&amp;hl=en&amp;q=saccharomyces+cerevisiae+genome&amp;btnmeta%3Dsearch%3Dsearch=Search+the+Web"><font face="Calibri" color="#800080">ref</font></a><font face="Calibri">).<span>  </span></font></span><span style="font-size: 14pt"><font face="Calibri"> </font></span></span></p>
<p><span style="font-size: 14pt"><span style="font-size: 14pt"><font face="Calibri">What I take away from this research is:</font></span></span></p>
<p><span style="font-size: 14pt"><span style="font-size: 14pt"></span><span style="font-family: Symbol; font-size: 14pt"><span>·<span style="font: 7pt 'Times New Roman'">        </span></span></span><span style="font-size: 14pt"><font face="Calibri">What we have here is another case of what was thought to be a well-understood cell component (a proteasome) showing up with a brand new function and importance.<span> </span></font></span></span></p>
<p><span style="font-size: 14pt"><span style="font-size: 14pt"><font face="Calibri"><span> </span></font></span><span style="font-family: Symbol; font-size: 14pt"><span>·<span style="font: 7pt 'Times New Roman'">        </span></span></span><span style="font-size: 14pt"><font face="Calibri">It provides another chunk of understand about important cell processes, another piece of the giant jigsaw puzzle that will eventually make clear to us what aging is and what we can do about it.<span>  </span>See my blog post <em><a href="http://anti-agingfirewalls.com/2009/05/13/the-longevity-jigsaw-puzzle/"><font color="#800080">The longevity jigsaw puzzle</font></a>.</em></font></span></span></p>
<p><span style="font-size: 14pt"><span style="font-size: 14pt"></span><span style="font-family: Symbol; font-size: 14pt"><span>·<span style="font: 7pt 'Times New Roman'">        </span></span></span><span style="font-size: 14pt"><font face="Calibri">With each new piece of the puzzle, it seems that more questions are raised than are answered.<span>  </span>In the case of the research described above some of the questions are: Do these results largely based on yeast studies completely carry over to apply to humans?<span>   </span>If so, what can be done about defects in the genes for the proteasome subunits rpn5ΔC and pup2 to help prevent cancers?<span>  </span>Do proteasomes play a similar role with other DNA repair genes besides Mms22? What other interventions might be suggested by this work to improve efficiency of repair of double-strand DNA breaks? </font></span></span></p>
<p><span style="font-size: 14pt"><span style="font-size: 14pt"></span><span style="font-family: Symbol; font-size: 14pt"><span>·<span style="font: 7pt 'Times New Roman'">        </span></span></span><span style="font-size: 14pt"><font face="Calibri">There is a lot more interesting research related to DNA repair beyond the thread covered here and I will probably come back to that topic again before too long.<span>  </span></font></span></span></p>
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		<title>Joy and sadness of aging – and the impacts of longevity</title>
		<link>http://anti-agingfirewalls.com/2010/02/27/joy-and-sadness-of-aging-%e2%80%93-and-the-impacts-of-longevity/</link>
		<comments>http://anti-agingfirewalls.com/2010/02/27/joy-and-sadness-of-aging-%e2%80%93-and-the-impacts-of-longevity/#comments</comments>
		<pubDate>Sat, 27 Feb 2010 17:11:31 +0000</pubDate>
		<dc:creator>admin</dc:creator>
		
		<category><![CDATA[Uncategorized]]></category>

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		<description><![CDATA[This blog post is philosophical rather than scientific in its thrust, having to do with what successful aging consists of, including successful passing away.  Aging offers certain benefits – as long as you don’t age so much that you get sick.  A Google search on “joy of aging” reveals 616,000 entries ranging from inspirational stories, [...]]]></description>
			<content:encoded><![CDATA[<p><span style="font-size: 14pt"><font face="Calibri">This blog post is philosophical rather than scientific in its thrust, having to do with what successful aging consists of, including successful passing away.<span>  </span></font></span><span style="font-size: 14pt"><font face="Calibri">Aging offers certain benefits – as long as you don’t age so much that you get sick.<span>  </span>A </font><a href="http://www.google.com/search?hl=en&amp;q=joy+of+aging&amp;start=0&amp;sa=N"><font face="Calibri" color="#800080">Google search on “joy of aging”</font></a><font face="Calibri"> reveals 616,000 entries ranging from inspirational stories, social groups, cartoons, jokes, poems and personal stories.<span>  </span>I share a few of those items here and what I think they are ultimately about. </font></span><span style="font-size: 14pt"></span><span style="font-size: 14pt"></span><span style="font-size: 14pt"></span><span style="font-size: 14pt"></span><span style="font-size: 14pt"></span><span style="font-size: 14pt"></span><span style="font-size: 14pt"></span><span style="font-size: 14pt"></span><span style="font-size: 14pt"></span><span style="font-size: 14pt"></span><span style="font-size: 14pt"><font face="Calibri"></p>
<h3 style="margin: auto 0in auto 0.25in"><span style="font-family: 'Calibri','sans-serif'; font-size: 14pt; font-weight: normal">First of all, there is the idea that if you are healthy and have a healthy positive outlook you can enjoy normal aging and the benefits it brings.<span>  </span>One joy is celebrating very long and deep relationships with friends, relatives and mates.<span>  </span>I know this kind of joy because I have at least one friendship that goes back 70 years and I have known my <a href="http://anti-agingfirewalls.com/2010/02/18/%e2%80%9ci-have-never-seen-a-doctor%e2%80%9d/"><font color="#800080">stepmother Ann</font></a> that long too. And I am close to my ex-wives going back to 1950s although I have known my splendid current wife for only 40 years.<span>  </span>And I look forward someday to playing with great-great grandchildren and being the elder in a family of seven simultaneous generations.</span></h3>
<p><span style="font-family: 'Calibri','sans-serif'; font-size: 14pt; font-weight: normal">There are many more benefits to healthy aging and an important one is accumulation of knowledge and wisdom that can be passed back to help younger folks live their lives.<span>  </span></span><span style="font-family: 'Calibri','sans-serif'; font-size: 14pt; font-weight: normal"><span> </span></span><span style="font-family: 'Calibri','sans-serif'; font-size: 14pt; font-weight: normal">Today we have the concept of <em><a href="http://ozpk.tripod.com/saging"><font color="#800080">Saging</font></a>.<span>  </span>“</em></span><span style="font-family: 'Calibri','sans-serif'; font-size: 14pt; font-weight: normal">SAGING, While Aging &#8212; The last decades are for Elders to reap the harvest of their days, their wisdom. Street corner wisdom says, “Old Age is not for sissies!” but does not tell us what Old Age is for. The Conscious Aging movement declares: old age is the season for Elders to review their lives, name lessons learned, gather the fruit of their days. Old Age is for Harvesting a Lifetime: a time to reclaim and preserve the wisdom of the ages, nurture visions of how life and love may thrive, master inner disciplines for healing wounds which cripple the future.” Of course Saging is an option, one I have chosen.<span>  </span>Other older people can choose instead to become grumpy, shut down, or pretend that they in fact not aging (something I have been accused of).<span>  </span>The importance of Saging is stressed in some organizations in the Men’s Movement, for example in the programs of the <em><a href="http://mankindproject.org/"><font color="#800080">Mankind Project</font></a></em>.<span>  </span>The idea is to restore some of the traditions and ceremonies that throughout history and before history was written honored wisdom and saw that it is passed from generation to generation.<span>  </span>See <em><a href="http://mankindprojectjournal.org/2009/06/wisdom-of-the-ages-elderly-to-elder-a-guide-for-fathers-and-sons/"><font color="#800080">Wisdom of the ages: From elderly to elder – A guide for fathers and sons</font></a>. </em></span></p>
<p><span style="font-size: 14pt"></span></p>
<p><span style="font-size: 14pt"></span></p>
<p><span style="font-size: 14pt"><font face="Calibri">Of course there is the <span style="line-height: 115%; font-family: 'Calibri','sans-serif'; font-size: 14pt"><a href="http://www.time.com/time/magazine/article/0,9171,918499,00.html"><font color="#800080">Joy of Aging book</font></a></span></font><font face="Calibri">.<span>  </span>“The book has the same size, feel and illustrated mini-encyclopedia format as the author&#8217;s last two manuals, The Joy of Sex and More Joy of Sex. But this time British Author Alex Comfort, 56, is trying for a pop bestseller on old age, not sexual hydraulics. <em>A Good Age</em> (Crown; $9.95) is Comfort&#8217;s attack on &#8220;agism&#8221;—prejudice against the elderly, which he considers society&#8217;s most stupid bias. <span> </span>After all, the elderly are the only outcast group that everyone eventually expects to join.”<span>  </span>I wonder if the Author’s name were <em>Alex Incontinence</em> instead of <em>Alex Comfort</em> whether he would still be able to sell the book.<span>  </span></font></span></p>
<p><span style="font-size: 14pt"><font face="Calibri"><span></span></font></span><span style="font-size: 14pt"></span></p>
<p><span style="font-size: 14pt"></span></p>
<p><span style="font-size: 14pt"><font face="Calibri">Many sites like <em><a href="http://www.religion-online.org/showarticle.asp?title=298"><font color="#800080">this one</font></a></em> and <em><a href="http://www.christianitytoday.com/biblestudies/articles/teaching/080723.html"><font color="#800080">this one</font></a> </em>offer a positive Christian perspective on growing old.<span>  </span>A few sites like <em><a href="http://www.directinglife.com/A%20Revived%20Ancient%20View%20of%20Aging.htm"><font color="#800080">this one</font></a></em> are deeply philosophical in nature.<span>  </span><em><a href="http://judithpordon.tripod.com/poetry/poems_on_aging.html"><font color="#800080">This site</font></a></em> offers poetry on aging. <span> </span>I thought this entry might speak to some of my readers:</font></span></p>
<p></font></span></p>
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<td style="width: 328.35pt; background: black; border: #ebe9ed; padding: 0in" width="438"><span style="font-family: 'Verdana','sans-serif'; color: #ffcc33; font-size: 10pt">Vitamins</span><span style="font-family: 'Verdana','sans-serif'; color: #ffcc33; font-size: 10pt">If there </span><font size="3"><span style="font-family: 'Times New Roman','serif'; color: #ffcc33">are others out there<br />
who also take twenty-three<br />
pills at a time four times<br />
every day, please contact me<br />
through the personals. We can<br />
help each other force them down.<br />
I will say they are tiny sandbags<br />
keeping things on course. Youll reply<br />
they are the flow itself, the tao.<br />
We will look shyly at each other.<br />
We will start to kiss. Together<br />
we will feel them ooze and sidle<br />
in teams through the digestive<br />
tract like synchronized swimmers.<br />
Who else will know your insides<br />
like me? The warm flush of waves<br />
when that orange horse pill hits<br />
the blood like a boulder. The fizz<br />
of cartilage holding itself together<br />
for another six hours. Time release<br />
capsules for dry bones, bleached<br />
desert rats gulping down canteen<br />
after canteen. What couple could<br />
have more in common than a continual<br />
dissolving? I am a young seventy-nine.<br />
Looking for a minumum taker of sixty<br />
pills daily. Call me if you want<br />
to twist some tops off. Lets rattle<br />
the bottles till they´re gone. Smokers okay.</span></font><font size="3"><span style="font-family: 'Times New Roman','serif'; color: #ffcc33">James Doyle<span style="font-family: 'Times New Roman','serif'; font-size: 12pt"></span></span></font></td>
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<p><span style="font-size: 14pt"></span><span style="font-size: 14pt"><span style="font-size: 14pt"></span></span></p>
<p><span style="font-size: 14pt"><span style="font-size: 14pt"><font face="Calibri">The Google <em>Joy of aging</em> citations include lots of blog entries like </font><a href="http://carolweisman.wordpress.com/2008/01/21/the-joy-of-aging/"><font face="Calibri" color="#800080">this one</font></a><font face="Calibri">, and </font><a href="http://stuartschneiderman.blogspot.com/2010/01/joy-of-aging.html"><font face="Calibri" color="#800080">this one</font></a><font face="Calibri">, <span> </span>often offering personal narratives on aging.<span>  </span>Many sites besides the religious ones offer inspirational advice, like the <em><span><a href="http://www.doctorlynn.com/e-book.html"><font color="#800080">Twelve Secrets to Anti-Aging &#8212; e-book <span>by Lynn A. Anderson, Ph.D., N.D.</span></font></a> </span></em>and </font><a href="http://www.heraldnet.com/article/20091130/OPINION04/711309997"><font face="Calibri" color="#800080">this site</font></a><font face="Calibri">. <span>  </span></font></span></span></p>
<p><span style="font-size: 14pt"><span style="font-size: 14pt"><font face="Calibri"><span></span></font></span><span style="font-size: 14pt"><font face="Calibri">Underneath all the verbiage and positive thoughts about growing old, there is another theme, one of ravages and sicknesses of old age and sadness over loss of functionality. Growing old and Saging may be noble but it is no fun if you are undergoing <span> </span>a leg amputation due to diabetes or your hair is falling out and you can’t hold food down because of chemotherapy, or when you are out with friends and have to empty your colostomy bag.<span>  </span></font></span><span style="font-size: 14pt"><font face="Calibri"> </font></span></span><span style="font-size: 14pt"> </span><span style="font-size: 14pt"><font face="Calibri"><span style="font-size: 14pt"></span></font></span><span style="font-size: 14pt"><font face="Calibri"><span style="font-size: 14pt">A number of videos offer songs and jokes old people tell on each other like </span><span class="MsoHyperlink"><em><span style="font-size: 14pt"><a href="http://www.youtube.com/watch?v=vyD19FmO1BI"><font color="#800080">this one</font></a></span></em></span><span style="font-size: 14pt">. The words of the song at the end of the video tell this bittersweet message, sung to the tune of <em>Camptown Racetrack</em>.</span></font><span style="font-size: 14pt"><font face="Calibri"> </font></span></span></p>
<p><span style="font-size: 14pt"><span style="font-size: 14pt"><span style="font-size: 11pt"><font face="Times New Roman">Grandma’s got a brand new hip, </font></span><span style="font-size: 11pt"><font face="Times New Roman">Do dah, do dah, </font></span><span style="font-size: 11pt"><font face="Times New Roman">She has collagen for a lip, </font></span><span style="font-size: 11pt"><font face="Times New Roman">Oh do dah, do dah day,</font></span><span style="font-size: 11pt"><font face="Times New Roman">G rowing old is fun, </font></span><span style="font-size: 11pt"><font face="Times New Roman">It sure beats staying young. </font></span><span style="font-size: 11pt"><font face="Times New Roman">I can’t find my IRA, </font></span><span style="font-size: 11pt"><font face="Times New Roman">Oh, do dah day.</font></span><span style="font-size: 11pt"><font face="Times New Roman">Grandpa had his knees replaced, </font></span><span style="font-size: 11pt"><font face="Times New Roman">Do dah, do dah, </font></span><span style="font-size: 11pt"><font face="Times New Roman">He has wrinkles for a face, </font></span><span style="font-size: 11pt"><font face="Times New Roman">Oh, do dah day.</font></span><span style="font-size: 11pt"><font face="Times New Roman">Growing old is fun, </font></span><span style="font-size: 11pt"><font face="Times New Roman">It sure beats staying young. </font></span><span style="font-size: 11pt"><font face="Times New Roman">I can’t remember yesterday, </font></span><span style="font-size: 11pt"><font face="Times New Roman">Oh, do dah day. </font></span><span style="font-size: 11pt"><font face="Times New Roman">I’ll tell you sumptin that’s even worse </font></span><span style="font-size: 11pt"><font face="Times New Roman">I don’t remember the first verse, </font></span><span style="font-size: 11pt"><font face="Times New Roman">Oh, do dah day </font></span><span style="font-size: 11pt"><font face="Times New Roman">Do dah, do dah, </font></span><span style="font-size: 11pt"><font face="Times New Roman">Growing old is fun,</font></span><span style="line-height: 115%; font-family: 'Calibri','sans-serif'; font-size: 11pt">  It sure beats staying young.</span></span></span></p>
<p><span style="font-size: 14pt"><span style="font-size: 14pt"><span style="line-height: 115%; font-family: 'Calibri','sans-serif'; font-size: 11pt"></span></span></span><span style="font-size: 14pt"><span style="font-size: 14pt"><span style="font-size: 14pt"><span style="font-size: 14pt"></span></span></span></span><span style="font-size: 14pt"><span style="font-size: 14pt"><span style="font-size: 14pt"><span style="font-size: 14pt"></span></span></span></span><span style="font-size: 14pt"><span style="font-size: 14pt"><span style="font-size: 14pt"><span style="font-size: 14pt"><font face="Calibri">This bittersweet theme runs deep in the “Joy of aging” Google citations.<span>  </span>From a </font><a href="http://www.christianitytoday.com/biblestudies/articles/teaching/080723.html"><font face="Calibri" color="#800080">Christian Bible site</font></a><font face="Calibri">, </font></span><span style="font-family: 'Times New Roman','serif'"><font size="3">“One story my wife and I both enjoy is about an elderly couple who was driving out to meet friends for a social evening. She says to him, &#8220;Honey, you try to remember where we&#8217;re going, and I&#8217;ll try to remember who we are.&#8221; <span> &#8221;My wild oats have turned into prunes and oat bran.&#8221; </span></font></span><span style="font-size: 14pt"><font face="Calibri">And nowhere are the ravages of old age more vividly portrayed than in the thousands of cartoons and jokes about old people kicking around the Internet(</font><a href="http://www.pmcaregivers.com/Humor.htm"><font face="Calibri" color="#800080">ref</font></a><font face="Calibri">)(</font><a href="http://www.butlerwebs.com/jokes/babyboomer4.htm"><font face="Calibri" color="#800080">ref</font></a><font face="Calibri">)(</font><a href="http://hubpages.com/hub/Old_people_jokes"><font face="Calibri" color="#800080">ref</font></a><font face="Calibri">)(</font><a href="http://www.lukaroski.com/jokes/oldpeople.asp"><font face="Calibri" color="#800080">ref</font></a><font face="Calibri">).<span>  </span>A lot of these are quite clever.<span>  </span>Advantages of growing old include(</font><a href="http://www.butlerwebs.com/jokes/babyboomer4.htm"><font face="Calibri" color="#800080">ref</font></a><font face="Calibri">):</font></span></span></span></span><span style="font-size: 14pt"><span style="font-size: 14pt"> </span></span><span style="font-size: 14pt"><span style="font-size: 14pt"><span style="font-size: 14pt"><span style="font-size: 14pt"></span><span style="font-family: Symbol; font-size: 10pt"><span>·<span style="font: 7pt 'Times New Roman'">         </span></span></span><span style="font-size: 11pt"><font face="Times New Roman">“Your eyes won&#8217;t get much worse,  <span style="font-size: 14pt"><span style="font-size: 14pt"></span><span style="font-family: Symbol; font-size: 10pt"><span>·<span style="font: 7pt 'Times New Roman'">  </span></span></span></span></font></span></span><span style="font-size: 14pt"><span style="font-family: Symbol; font-size: 10pt"><span><span style="font: 7pt 'Times New Roman'">        </span></span></span><span style="font-size: 11pt"><font face="Times New Roman">Your investment in health insurance is finally beginning to pay off, <span style="font-size: 14pt"><span style="font-size: 14pt"></span><span style="font-family: Symbol; font-size: 10pt"><span>·<span style="font: 7pt 'Times New Roman'"> </span></span></span></span></font></span></span><span style="font-size: 14pt"><span style="font-family: Symbol; font-size: 10pt"><span><span style="font: 7pt 'Times New Roman'">         </span></span></span><span style="font-size: 11pt"><font face="Times New Roman">Kidnappers are not very interested in you, and </font></span></span><span style="font-size: 14pt"><span style="font-family: Symbol; font-size: 10pt"><span>·<span style="font: 7pt 'Times New Roman'">         </span></span></span><span style="font-size: 11pt"><font face="Times New Roman">In a hostage situation you are likely to be released first.” </font></span></span></span></span><span style="font-size: 14pt"><span style="font-size: 14pt"><span style="font-size: 14pt"><span style="font-size: 11pt"></span><span style="font-size: 14pt"><font face="Calibri">So, there is both a joy and sadness to aging.<span>  </span>Here are some of my own thoughts:</font></span></span></span></span></p>
<ul style="margin-top: 0in" type="disc">
<li style="line-height: normal; margin: 0in 0in 0.25in; background: white; tab-stops: list .5in" class="MsoNormal"><span style="font-size: 14pt"><font face="Calibri">I have not thought much about immortality: the idea of “live long enough and you can live forever” which contemplates a future time when a human life might be continued in an “immortal” machine environment.<span>  </span>I see that idea as more of a fantasy than as possible reality for the next fifty years at least and will think about it at a later time if and as it shows any hope of becoming real.<span>  </span>For me right now, radical life extension means living for a few hundred years in our original bodies.<span>  </span>And that is a huge reach in itself.</font></span></li>
<li style="line-height: normal; margin: 12pt 0in 0.25in; background: white; tab-stops: list .5in" class="MsoNormal"><span style="font-size: 14pt"><font face="Calibri">Therefore, life extension, the thrust of this blog, will not get rid of aging, at least not very soon.<span>  </span>It hopefully will postpone aging for a goodly amount but the grim reaper is still going to get all of us.<span>  </span></font></span></li>
<li style="line-height: normal; margin: 12pt 0in 0.25in; background: white; tab-stops: list .5in" class="MsoNormal"><span style="font-size: 14pt"><font face="Calibri">The longer the life, the more the joys of life can be amplified.<span>  </span>I will love to play Monopoly and have funfull intellectual discussions with my great-great grandchildren, to keep expanding my wisdom and its impact on the world, and perhaps even to see a better more-responsible world order.</font></span></li>
<li style="line-height: normal; margin: 12pt 0in 0.25in; background: white; tab-stops: list .5in" class="MsoNormal"><span style="font-size: 14pt"><font face="Calibri">While some sickness may be inevitable towards the end of life the impact of increasing longevity should be in an increase of the ratio of good healthy years to sick old years.<span>  </span>So, in the context of a good long healthy life, the sick unhealthy part at the end becomes less important.<span>  </span></font></span></li>
<li style="line-height: normal; margin: 12pt 0in 0.25in; background: white; tab-stops: list .5in" class="MsoNormal"><span style="font-size: 14pt"><font face="Calibri">The ideal outcome of life extension would be adding a lot of good healthy years until death comes quickly without a lot of debilitating sickness – the “One-hoss shay” idea from </font><a href="http://www.readbookonline.net/readOnLine/1157/"><font face="Calibri" color="#800080">the poem</font></a><font face="Calibri"> with that name by Oliver Wendell Holmes.</font></span><font face="Calibri"><span><font size="3">  </font></span><span style="font-size: 14pt"><span> </span>The initial and final stanzas are:</span></font></li>
</ul>
<p><span style="font-size: 11pt"><font face="Times New Roman">“A Logical Story</font></span></p>
<p><span style="font-size: 11pt"></span><span style="font-size: 11pt"><font face="Times New Roman">Have you heard of the wonderful one-horse shay,<br />
That was built in such a logical way<br />
It ran a hundred years to a day,<br />
And then, of a sudden, it&#8211;ah but stay,<br />
I&#8217;ll tell you what happened without delay,<br />
Scaring the parson into fits,<br />
Frightening people out of their wits,<br />
Have you ever heard of that, I say?</font></span><span style="font-size: 11pt"><font face="Times New Roman">Seventeen hundred and fifty-five,<br />
Georgius Secundus was then alive,<br />
Snuffy old drone from the German hive.<br />
That was the year when Lisbon-town<br />
Saw the earth open and gulp her down<br />
And Braddock&#8217;s army was done so brown,<br />
Left without a scalp to its crown.<br />
It was on the terrible Earthquake-day<br />
That the Deacon finished the one-hoss shay.</font></span><span style="font-size: 11pt"><font face="Times New Roman">Now in building of chaises, I tell you what,<br />
There is always somewhere a weakest spot, -<br />
In hub, tire, felloe, in spring or thill,<br />
In panel, or crossbar, or floor, or sill,<br />
In screw, bolt, thoroughbrace,&#8211;lurking still,<br />
Find it somewhere you must and will,&#8211;<br />
Above or below, or within or without,&#8211;<br />
And that&#8217;s the reason, beyond a doubt,<br />
That a chaise breaks down, but doesn&#8217;t wear out.</font></span></p>
<p style="border-bottom: windowtext 1pt solid; border-left: medium none; padding-bottom: 1pt; padding-left: 0in; padding-right: 0in; margin-left: 1in; border-top: medium none; margin-right: 0in; border-right: medium none; padding-top: 0in"><span style="font-size: 11pt"><font face="Times New Roman">But the Deacon swore (as Deacons do,<br />
With an &#8220;I dew vum,&#8221; or an &#8220;I tell yeou,&#8221;)<br />
He would build one shay to beat the taown<br />
&#8216;n&#8217; the keounty &#8216;n&#8217; all the kentry raoun&#8217;;<br />
It should be so built that it couldn&#8217; break daown,<br />
&#8220;Fur,&#8221; said the Deacon, &#8220;It&#8217;s mighty plain<br />
Thut the weakes&#8217; place mus&#8217; Stan&#8217; the strain;<br />
&#8216;n&#8217; the way t&#8217; fix it, uz I maintain,<br />
Is only jest<br />
T&#8217; make that place uz strong uz the rest.&#8221;</font></span></p>
<p><span style="font-size: 11pt"><font face="Times New Roman">First of November, &#8216;Fifty-five!<br />
This morning the parson takes a drive.<br />
Now, small boys, get out of the way!<br />
Here comes the wonderful one-hoss shay,<br />
Drawn by a rat-tailed, ewe-necked bay.<br />
&#8220;Huddup!&#8221; said the parson.&#8211;Off went they.<br />
The parson was working his Sunday&#8217;s text,&#8211;<br />
Had got to fifthly, and stopped perplexed<br />
At what the&#8211;Moses&#8211;was coming next.</font></span><span style="font-size: 11pt"><font face="Times New Roman">All at once the horse stood still,<br />
Close by the meet&#8217;n'-house on the hill.<br />
First a shiver, and then a thrill,<br />
Then something decidedly like a spill,&#8211;<br />
And the parson was sitting upon a rock,<br />
At half past nine by the meet&#8217;n'-house clock&#8211;<br />
Just the hour of the Earthquake shock!</font></span><span style="font-size: 11pt"><font face="Times New Roman">What do you think the parson found,<br />
When he got up and stared around?<br />
The poor old chaise in a heap or mound,<br />
As if it had been to the mill and ground!<br />
You see, of course, if you&#8217;re not a dunce,<br />
How it went to pieces all at once,<br />
All at once, and nothing first,<br />
Just as bubbles do when they burst.</font></span><span style="font-size: 11pt"><font face="Times New Roman">End of the wonderful one-boss shay.<br />
Logic is logic. That&#8217;s all I say.”</font></span></p>
<p><span style="font-size: 11pt"></span><span style="font-family: 'Calibri','sans-serif'; font-size: 14pt">It seems that much of modern medicine is concerned with shoring up the weakest parts, so we could indeed end up with our bodies responding sort of like the one-hoss shay.</span></p>
<p><span style="font-family: 'Calibri','sans-serif'; font-size: 14pt"></span><span style="font-family: Symbol; font-size: 10pt"><span>·<span style="font: 7pt 'Times New Roman'">         </span></span></span><span style="font-family: 'Calibri','sans-serif'; font-size: 14pt">Finally, there will continue to be the bittersweet human relationships, memories and thoughts near the end of life, the difficulty of saying goodbye which may become harder for people who live longer.<span>  </span>So, I expect that aspect of the human condition will remain.</span></p>
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		<title>New views of Alzheimer’s disease and new approaches to treating it</title>
		<link>http://anti-agingfirewalls.com/2010/02/25/new-views-of-alzheimer%e2%80%99s-disease-and-new-approaches-to-treating-it/</link>
		<comments>http://anti-agingfirewalls.com/2010/02/25/new-views-of-alzheimer%e2%80%99s-disease-and-new-approaches-to-treating-it/#comments</comments>
		<pubDate>Thu, 25 Feb 2010 02:30:45 +0000</pubDate>
		<dc:creator>admin</dc:creator>
		
		<category><![CDATA[Uncategorized]]></category>

		<guid isPermaLink="false">http://anti-agingfirewalls.com/2010/02/25/new-views-of-alzheimer%e2%80%99s-disease-and-new-approaches-to-treating-it/</guid>
		<description><![CDATA[Alzheimer’s disease (AD) is a progressive and fatal disease affecting as many as 5.2 million Americans, the fourth most common cause of death in developing nations.  There are various treatments for symptoms of AD but as of now there is no cure(ref).   My purposes here are 1. to review a chain of research findings that [...]]]></description>
			<content:encoded><![CDATA[<p><span style="color: #35332f; font-size: 14pt"><font face="Calibri">Alzheimer’s disease (AD) is a progressive and fatal disease affecting as many as 5.2 million Americans, the fourth most common cause of death in developing nations</font><font face="Calibri">.<span>  </span>There are various treatments for symptoms of AD but as of now there is no cure(</font><a href="http://www.alz.org/alzheimers_disease_what_is_alzheimers.asp"><span style="font-size: 11pt"><font face="Calibri" color="#800080">ref</font></span></a><font face="Calibri">).<span>   </span>My purposes here are 1. to review a chain of research findings that seem to point to the cause of AD and how ultimately to prevent it, and 2.<span>  </span>To review research and clinical trials that may in the more immediate future provide therapies that slow the destructive process of AD.</font></span></p>
<p><span style="color: #35332f; font-size: 14pt"></span><span style="color: #35332f; font-size: 14pt"><font face="Calibri">In case you have forgotten, “Alzheimer&#8217;s disease is a neurodegenerative disorder that represents the most important cause of dementia in humans. Extracellular deposits of </font><a href="http://en.wikipedia.org/wiki/Beta_amyloid"><span style="font-size: 11pt"><font face="Calibri" color="#800080">β-amyloid</font></span></a><font face="Calibri"> peptides (Aβ), often termed senile plaques, and formation of intracellular </font><a href="http://en.wikipedia.org/wiki/Tau_tangle"><span style="font-size: 11pt"><font face="Calibri" color="#800080">neurofibrillary tangles</font></span></a><font face="Calibri"> of hyperphosphorylated </font><a href="http://en.wikipedia.org/wiki/Tau_protein"><span style="font-size: 11pt"><font face="Calibri" color="#800080">tau protein</font></span></a><font face="Calibri"> are the two principal hallmarks of this disease. Aβ aggregates are known to induce synaptic dysfunction, and thus are linked with learning and memory deficits in both human and mouse models of the disease, making Aβ deposits a target for prevention or treatment(</font><a href="http://brain.oxfordjournals.org/cgi/content/abstract/132/4/1078"><span style="font-size: 11pt"><font face="Calibri" color="#800080">ref</font></span></a><font face="Calibri">).”<span>  </span></font></span></p>
<p><span style="color: #35332f; font-size: 14pt"><font face="Calibri"><span></span></font></span><span style="color: #35332f; font-size: 14pt"><a href="http://en.wikipedia.org/wiki/Microglia"><span style="font-size: 11pt"><font face="Calibri" color="#800080">Microglia</font></span></a><font face="Calibri"> are intimately involved in the maintenance of normal brain functioning and in the etiology of many neurodegenerative conditions, including AD.<span>  </span>“</font></span><font face="Calibri"><span style="font-size: 14pt" lang="EN">Microglia</span><span style="font-size: 14pt" lang="EN"> are a type of <a href="http://en.wikipedia.org/wiki/Glial_cell" title="Glial cell"><span style="font-size: 11pt">glial cells</span></a> that are the resident <a href="http://en.wikipedia.org/wiki/Macrophages" title="Macrophages"><span style="font-size: 11pt">macrophages</span></a> of the <a href="http://en.wikipedia.org/wiki/Brain" title="Brain"><span style="font-size: 11pt">brain</span></a> and <a href="http://en.wikipedia.org/wiki/Spinal_cord" title="Spinal cord"><span style="font-size: 11pt">spinal cord</span></a>, and thus act as the first and main form of active immune defense in the <a href="http://en.wikipedia.org/wiki/Central_nervous_system" title="Central nervous system"><span style="font-size: 11pt">central nervous system</span></a> (CNS). Microglia constitute 20% of the total glial cell population within the brain.<sup>]</sup> Microglia (and <a href="http://en.wikipedia.org/wiki/Astrocytes" title="Astrocytes"><span style="font-size: 11pt">astrocytes</span></a>) are distributed in large non-overlapping regions throughout the brain and spinal cord.<sup><a href="http://en.wikipedia.org/wiki/Microglia#cite_note-Kreutzberg_1995-0">[1]</a><a href="http://en.wikipedia.org/wiki/Microglia#cite_note-Bushong_2002-1">[2]</a></sup> Microglia are constantly excavating the CNS for damaged neurons, plaques, and infectious agents(<a href="http://en.wikipedia.org/wiki/Microglia"><span style="font-size: 11pt"><font color="#800080">ref</font></span></a>).<sup><a href="http://en.wikipedia.org/wiki/Microglia#cite_note-Gehrmann_1995-2">[3]</a></sup></span><span style="color: #35332f; font-size: 14pt">”</span></font></p>
<p><font face="Calibri"><span style="color: #35332f; font-size: 14pt"></span></font><span style="color: #35332f; font-size: 14pt"><font face="Calibri">One role of microglia, that of amplifying pain, was introduced in the blog post <span style="line-height: 115%; font-family: 'Calibri','sans-serif'; color: #35332f; font-size: 14pt"><a href="http://anti-agingfirewalls.com/2009/11/04/spinal-cord-injury-pain-%e2%80%93-a-personal-story-and-a-new-paradigm/"><em><font color="#800080">Spinal cord injury pain</font></em></a></span><em>.<span>  </span></em>There have been various theories as to the involvement of microglia in AD including a very interesting new one.<span>  </span></font></span><span style="color: #35332f; font-size: 14pt"><font face="Calibri">Physically, “Microglia are attracted to Aβ aggregates and decorate plaques. Such a phenomenon has been observed in both human and transgenic mouse model of Alzheimer&#8217;s disease, suggesting an important role for these cells in the CNS(</font><a href="http://brain.oxfordjournals.org/cgi/content/abstract/132/4/1078"><span style="font-size: 11pt"><font face="Calibri" color="#800080">ref</font></span></a><font face="Calibri">).”<span>  </span></font></span></p>
<p><span style="color: #35332f; font-size: 14pt"><font face="Calibri"><span></span></font></span><strong><span style="color: #35332f; font-size: 14pt"><font face="Calibri">AD, microglia and cellular senescence </font></span></strong></p>
<p><strong><span style="color: #35332f; font-size: 14pt"></span></strong><span style="color: #35332f; font-size: 14pt"><font face="Calibri">Over less than a decade there has been a 180 degree shift from seeing microglial <em>activation</em> as a main cause of AD to seeing microglial <em>senescence</em> as a main cause of AD.</font></span><span style="color: #35332f; font-size: 14pt"></span><span style="color: #35332f; font-size: 14pt"></span><span style="color: #35332f; font-size: 14pt"></span><span style="color: #35332f; font-size: 14pt"></span><span style="color: #35332f; font-size: 14pt"></span><span style="color: #35332f; font-size: 14pt"></span><span style="color: #35332f; font-size: 14pt"></span><span style="color: #35332f; font-size: 14pt"></span><span style="color: #35332f; font-size: 14pt"></span><span style="color: #35332f; font-size: 14pt"></span><span style="color: #35332f; font-size: 14pt"></span><span style="color: #35332f; font-size: 14pt"></span><span style="color: #35332f; font-size: 14pt"></span><span style="color: #35332f; font-size: 14pt"></span><span style="color: #35332f; font-size: 14pt"></span><span style="color: #35332f; font-size: 14pt"><font face="Calibri"></p>
<p style="line-height: normal; margin: 0in 0in 0.25in 0.25in; background: white" class="MsoNormal"><span style="color: #35332f; font-size: 14pt">For a period of time many researchers thought that </span><span style="color: black; font-size: 14pt">microglial activation caused by </span><span style="color: #35332f; font-size: 14pt">Aβ plaque creates an inflammatory condition that results in neuron degeneration in AD.<span>  </span>The 2004 publication <span style="line-height: 115%; font-family: 'Calibri','sans-serif'; color: #35332f; font-size: 14pt"><a href="http://www.jneuroinflammation.com/content/1/1/14"><em><font color="#800080">Microglia and neuroinflammation: a pathological perspective</font></em></a> </span>makes the point that this view is far too simplistic. “</span><span style="font-size: 14pt"><font color="#000000">The idea that neuroinflammation is detrimental implies that glial cell activation precedes and causes neuronal degeneration </font><a title="IDAXDEJK" name="IDAXDEJK"></a><font color="#000000">[</font><a href="http://www.jneuroinflammation.com/content/1/1/14#B2"><span style="color: #003399">2</span></a><font color="#000000">], a sequence of events that appears to be at odds with experimental models of neurodegeneration in which glial cell activation occurs secondary to neuronal damage. What is missing from this simple linear model is the understanding that chronic neurological diseases are just that – chronic, and that this chronicity introduces complex interactions and feedback loops between neurons and glia that render attempts to construct simple, linear cascades of cause and effect inelegant.”<span>  </span>However, this publication concludes “Chronic microglial activation is an important component of neurodegenerative diseases, and this chronic neuroinflammatory component likely contributes to neuronal dysfunction, injury, and loss (and hence to disease progression) in these diseases.”</font></span></p>
<h1 style="margin: 12pt 0in 3pt 0.25in; background: white"><span style="line-height: 115%; font-family: 'Calibri','sans-serif'; font-size: 14pt; font-weight: normal"><font color="#000000">The 2006 paper </font><em><a href="http://www.ncbi.nlm.nih.gov/pubmed/16859761?dopt=Abstract"><span style="line-height: 115%; font-size: 16pt"><font color="#800080">Microglial senescence: does the brain&#8217;s immune system have an expiration date?</font></span></a></em><font color="#000000"> suggests that replicative senescence of microglia might have to do with neurodegenerative diseases like AD, a theme to be picked up more powerfully later.</font></span><span style="line-height: 115%; font-family: 'Calibri','sans-serif'; font-size: 14pt"></span></h1>
<p><span style="color: #35332f; font-size: 14pt"></span><span style="color: #35332f; font-size: 14pt"><font face="Calibri">By mid-2008 a much more positive role for microglia in AD was emerging as exemplified in the publication </font><font color="#000000"> <span style="line-height: 115%; font-family: 'Calibri','sans-serif'; font-size: 14pt"><a href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2640215/"><font color="#800080"><strong>Debris clearance by </strong><span style="font-weight: normal">microglia</span><strong>: an essential link between degeneration and regeneration</strong></font></a></span>“In Alzheimer disease microglia can be beneficial by phagocytosing Aβ or harmful by secretion of neurotoxins. Recently it was shown in an animal model of Alzheimer disease plaque formation that microglia accumulation is associated with rapid appearance and local toxicity of Aβ plaques &#8212; Thus, there is certain evidence that either local microglia or invading blood-derived macrophages restrict Aβ deposits in an animal model of Alzheimer disease.”<span>  </span>The same publication points out that microglia are subject to replicative cellular senescence implying age-related decline in their phagocytic activity.<span>  </span><span> </span>“Ageing is associated with senescence of </font></span><font color="#000000"><span style="font-style: normal; font-family: 'Calibri','sans-serif'; font-weight: normal">microglia</span><span style="font-style: normal; font-family: 'Calibri','sans-serif'; font-weight: normal"> and impaired </span><span style="font-style: normal; font-family: 'Calibri','sans-serif'; font-weight: normal">microglia</span><span style="font-style: normal; font-family: 'Calibri','sans-serif'; font-weight: normal">l clearance functions. In particular, data indicate that </span><span style="font-style: normal; font-family: 'Calibri','sans-serif'; font-weight: normal">microglia</span><span style="font-style: normal; font-family: 'Calibri','sans-serif'; font-weight: normal"> in aged rodent and human brains show a replicative senescence with a reduced self-renewal capacity (Streit, 2006). </span><span style="font-style: normal; font-family: 'Calibri','sans-serif'; font-weight: normal">Microglia</span></font><span style="font-style: normal; font-family: 'Calibri','sans-serif'; font-weight: normal"><font color="#000000"> in aged animals were characterized by the presence of lipofuscin granules, decreased processes complexity, altered granularity and increased mRNA expression of pro-inflammatory cytokines such as TNF-alpha <span style="line-height: 115%; font-family: 'Calibri','sans-serif'; font-size: 11pt"><span><strong><em> </em></strong></span></span></font><font color="#000000">and IL-1β (Sierra et al., 2007</font><imagedata o:title="Go" src="file:///C:\DOCUME~1\Owner\LOCALS~1\Temp\msohtmlclip1\01\clip_image002.gif"></imagedata><font color="#000000">). Furthermore, older rats compared to young rats showed delayed recruitment of phagocytic cells and less clearance of myelin after a toxin-induced demyelination lesion (Zhao et al., 2006</font><a href="http://brain.oxfordjournals.org/cgi/content/full/awn109#B71"><span style="color: windowtext; text-decoration: none; text-underline: none"><shape o:spid="_x0000_i1027" o:button="t" type="#_x0000_t75" alt="Go" style="width: 6pt; height: 5.25pt; visibility: visible" id="Picture_x0020_566"></shape> <imagedata o:title="Go" src="file:///C:\DOCUME~1\Owner\LOCALS~1\Temp\msohtmlclip1\01\clip_image002.gif"></imagedata></span></a><font color="#000000">), which correlates with the slower remyelination in older animals (Sim et al., 2002</font><a href="http://brain.oxfordjournals.org/cgi/content/full/awn109#B59"><span style="color: windowtext; text-decoration: none; text-underline: none"><shape o:spid="_x0000_i1028" o:button="t" type="#_x0000_t75" alt="Go" style="width: 6pt; height: 5.25pt; visibility: visible" id="Picture_x0020_567"></shape> <imagedata o:title="Go" src="file:///C:\DOCUME~1\Owner\LOCALS~1\Temp\msohtmlclip1\01\clip_image002.gif"></imagedata></span></a><font color="#000000">). Thus, </font></span><font color="#000000"><span style="font-style: normal; font-family: 'Calibri','sans-serif'; font-weight: normal">microglia</span><span style="font-style: normal; font-family: 'Calibri','sans-serif'; font-weight: normal"> dysfunction occurring as a result of ageing might contribute to the exacerbation of chronic neurodegenerative diseases and Aβ plaque load in Alzheimer disease and a reduced repair capacity in aged individuals.”<span>  </span></span></font></p>
<h2></h2>
<p><span style="color: #35332f; font-size: 14pt"></span><span style="color: #35332f; font-size: 14pt"><span style="color: #35332f; font-size: 14pt">Finally, the role of microglial senescence in AD was clearly delineated in the October 2009 publication  <em><a href="http://www.ncbi.nlm.nih.gov/pubmed/19513731"><font color="#800080"><span style="font-size: 11pt">Dystrophic (senescent) rather than activated microglial cells are associated with tau pathology and likely precede neurodegeneration in Alzheimer&#8217;s disease</span></font></a><span style="font-style: normal; color: windowtext; text-decoration: none; text-underline: none">-&#8221;&#8211; the purpose of this study was to investigate microglial cells in situ and at high resolution in the immediate vicinity of tau-positive structures in order to determine conclusively whether degenerating neuronal structures are associated with activated or with dystrophic microglia. </span><span style="font-style: normal; color: windowtext; font-size: 11pt; text-decoration: none; text-underline: none"><span>  </span></span></em><span> </span>&#8211; </span><span style="font-size: 14pt"><font color="#000000">We now report histopathological findings from 19 humans covering the spectrum from none to severe AD pathology, including patients with Down&#8217;s syndrome, showing that degenerating neuronal structures positive for tau (neuropil threads, neurofibrillary tangles, neuritic plaques) are invariably colocalized with severely dystrophic (fragmented) rather than with activated microglial cells. Using Braak staging of Alzheimer neuropathology we demonstrate that microglial dystrophy precedes the spread of tau pathology. Deposits of amyloid-beta protein (Abeta) devoid of tau-positive structures were found to be colocalized with non-activated, ramified microglia, suggesting that Abeta does not trigger microglial activation. &#8212; <span> </span>The findings reported here strongly argue against the hypothesis that neuroinflammatory changes contribute to AD dementia. Instead, they offer an alternative hypothesis of AD pathogenesis that takes into consideration: (1) the notion that microglia are neuron-supporting cells and neuroprotective; (2) the fact that development of non-familial, sporadic AD is inextricably linked to aging. <em>They support the idea that progressive, aging-related microglial degeneration and loss of microglial neuroprotection rather than induction of microglial activation contributes to the onset of sporadic Alzheimer&#8217;s disease</em>.”<span>  </span>Our old friend/enemy cellular senescence seems to be the villain again.</font></span></span></p>
<p><span style="color: #35332f; font-size: 14pt"><span style="font-size: 14pt"></span><span style="color: #35332f; font-size: 14pt">A number of approaches have been successful in clearing out beta amyloid plaques in small-animal models of AD. </span></span></p>
<p><span style="color: #35332f; font-size: 14pt"><span style="color: #35332f; font-size: 14pt"></span><span style="font-size: 14pt"><font color="#000000">Clearing amyloid-beta plaque using IL-6</font></span></span></p>
<p><span style="color: #35332f; font-size: 14pt"><span style="font-size: 14pt"></span><span style="color: #35332f; font-size: 14pt">The October 2009 publication <em><a href="http://www.fasebj.org/cgi/content/short/24/2/548"><font color="#800080">Massive gliosis induced by interleukin-6 suppresses Aβ deposition in vivo: evidence against inflammation as a driving force for amyloid deposition</font></a></em> seems to offer the most dramatic result and conclusion.<span>  </span>The abstract starts out “Proinflammatory stimuli, after amyloid β (Aβ) deposition, have been hypothesized to create a self-reinforcing positive feedback loop that increases amyloidogenic processing of the Aβ precursor protein (APP), promoting further Aβ accumulation and neuroinflammation in Alzheimer’s disease (AD). Interleukin-6 (IL-6), a proinflammatory cytokine, has been shown to be increased in AD patients implying a pathological interaction.”<span>  </span>The experiment resulted in an opposite result, where in mice overexpression of IL-6 in mouse brains with amyloid plaques unexpectedly resulted in massive <span> </span>clearing out of the amyloid.<span>  </span>As pointed out in a <a href="http://www.sciencedaily.com/releases/2009/10/091015091602.htm"><font color="#800080">ScienceDaily release</font></a> “ &#8212; the researchers over-expressed IL-6 in the brains of newborn mice that had yet to develop any amyloid plaques, as well in mice with pre-existing plaques. Using somatic brain transgenesis technology, scientists analyzed the effect of IL-6 on brain neuro-inflammation and plaque deposition. In both groups of mice, the presence of IL-6 lead to the clearance of amyloid plaques from the brain. Researchers then set out to determine exactly how IL-6 worked to clear the plaques and discovered that the inflammation induced by IL-6 directed the microglia to express proteins that removed the plaques. This research suggests that manipulating the brain&#8217;s own immune cells through inflammatory mediators could lead to new therapeutic approaches for the treatment of neurodegenerative diseases, particularly Alzheimer&#8217;s disease(ref).”<span>  </span>IL-6 expression, previously thought to be a major part of the problem in AD is now seen to be potentially part of the solution.<span>  </span>As far as I know, there has been no human experimentation yet involving treatment of AD using IL-6.</span></span></p>
<p><span style="color: #35332f; font-size: 14pt"><span style="color: #35332f; font-size: 14pt"></span><span style="color: #35332f; font-size: 14pt">Clearing amyloid-beta plaque using granulocyte colony stimulating factor</span></span></p>
<p><span style="color: #35332f; font-size: 14pt"><span style="color: #35332f; font-size: 14pt"></span><span style="color: #35332f; font-size: 14pt">The September 2009 publication <em><a href="http://www.ncbi.nlm.nih.gov/pubmed/19500657?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&amp;ordinalpos=2"><font color="#800080">Granulocyte colony stimulating factor decreases brain amyloid burden and reverses cognitive impairment in Alzheimer&#8217;s mice</font></a></em> and the April 2009 publication <em><a href="http://www.ncbi.nlm.nih.gov/pubmed/19151372?ordinalpos=1&amp;itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_SingleItemSupl.Pubmed_Discovery_RA&amp;linkpos=1&amp;log$=relatedarticles&amp;logdbfrom=pubmed"><font color="#800080">Powerful beneficial effects of macrophage colony-stimulating factor on beta-amyloid deposition and cognitive impairment in Alzheimer&#8217;s disease</font></a></em> suggest another approach to clearing out beta-amyloid plaques.<span>  </span>“Together these results provide compelling evidence that systemic M-CSF administration is a powerful treatment to stimulate bone marrow-derived microglia, degrade Abeta and prevent or improve the cognitive decline associated with Abeta burden in a mouse model of Alzheimer&#8217;s disease(<a href="http://www.ncbi.nlm.nih.gov/pubmed/19151372?ordinalpos=1&amp;itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_SingleItemSupl.Pubmed_Discovery_RA&amp;linkpos=1&amp;log$=relatedarticles&amp;logdbfrom=pubmed"><font color="#800080">ref</font></a>).”<span>  </span>Again, as far as I know use of granulocyte colony stimulating factor (GCSF) for treating AD has not yet proceeded to the clinical testing stage for humans with AD.<span>  </span>Clinical trials could proceed fairly quickly however, since GCSF is an approved substance used for other medical purposes. “GCSF is a blood stem cell growth factor or hormone routinely administered to cancer patients whose blood stem cells and white blood cells have been depleted following chemotherapy or radiation. GCSF stimulates the bone marrow to produce more white blood cells needed to fight infection. It is also used to boost the numbers of stem cells circulating in the blood of donors before the cells are harvested for bone marrow transplants. Advanced clinical trials are now investigating the effectiveness of GCSF to treat stroke, and the compound was safe and well tolerated in early clinical studies of ischemic stroke patients(<a href="http://hscweb3.hsc.usf.edu/health/now/?p=6651"><font color="#800080">ref</font></a>).”</span></span></p>
<p><span style="color: #35332f; font-size: 14pt"><span style="color: #35332f; font-size: 14pt"></span><span style="color: #35332f; font-size: 14pt">Clearing amyloid-beta plaque using monoclonal antibodies</span></span></p>
<p><span style="color: #35332f; font-size: 14pt"><span style="color: #35332f; font-size: 14pt"></span><span style="color: #35332f; font-size: 14pt">Back in 2003 <a href="http://websites.afar.org/site/PageServer?pagename=IA_d_alz_17_r_plaques"><font color="#800080">it was reported</font></a> “Researchers from Lilly Research Laboratories and Elan Pharmaceuticals, among other laboratories, are working on a novel method for reversing the damage caused by amyloid plaques. They have found that certain monoclonal antibodies bind to beta amyloid and clear it from the brain. In experiments with mice engineered to develop Alzheimer&#8217;s-like symptoms, scientists from Lilly demonstrated that treatment with the monoclonal antibody m266, called &#8220;passive immunization,&#8221; not only cleared beta amyloid from the brains of the mice but also reversed some of their memory problems.”<span>  </span>Now, seven years later, two monoclonal antibody substances </span><span style="color: black; font-size: 14pt"><a href="http://braintoday.blogspot.com/2009/06/solanezumab-another-monoclonal-antibody.html"><font color="#800080">solanezumab</font></a></span><span style="font-family: 'Arial','sans-serif'; color: black; font-size: 13.5pt"> (Lilly) and </span><span style="color: #333333; font-size: 14pt"><a href="http://en.wikipedia.org/wiki/Bapineuzumab"><font color="#800080">bapineuzumab</font></a> (Elan) are in <a href="http://en.wikipedia.org/wiki/Clinical_trial#Phase_III"><font color="#800080">Phase III clinical trials</font></a>.<span>  </span>“</span><span style="color: #35332f; font-size: 14pt">Bapineuzumab is a humanized monoclonal antibody, which binds to and clears beta-amyloid peptide, and is designed to provide antibodies to beta amyloid directly to the patient(<a href="http://clinicaltrials.gov/ct2/show/NCT00574132"><font color="#800080">ref</font></a>).”</span></span></p>
<p><span style="color: #35332f; font-size: 14pt"><span style="color: #35332f; font-size: 14pt"></span><span style="color: #35332f; font-size: 14pt">There are many more research and drug developments related to AD than I can cover here. The <a href="http://www.nia.nih.gov/Alzheimers/ResearchInformation/ClinicalTrials/"><font color="#800080">clinical trials database</font></a> for AD shows 62 trials that are currently recruiting.<span>  </span></span><span style="font-size: 14pt"><font color="#000000">Where does this all leave me?</font></span></span></p>
<ul style="margin-top: 0in" type="disc">
<li style="line-height: normal; margin: 0in 0in 0.25in; background: white; color: #35332f; tab-stops: list .5in" class="MsoNormal">First of all, I am glad to see the new insights implicating senescence of microglia as a probably cause of AD. The new viewpoint brings us back yet-again to the central issue of aging and the importance of preventing age-related cellular senescence. Alzheimer’s disease is age related. If we can find ways to slow down aging, those ways will in themselves delay occurrences of AD. If we could stop aging, we could eradicate almost all AD. Let’s keep our eye on the ball that really counts.</li>
<li style="line-height: normal; margin: 0in 0in 0.25in; background: white; color: #35332f; tab-stops: list .5in" class="MsoNormal">In this context I am glad to see renewed emphasis on prevention rather than cure of AD. “Within the last few years, the focus of the Alzheimer’s disease research community has shifted from seeking a cure for the disease to concentrating on prevention. The National Institutes of Health have earmarked more research funding for research centers investigating prevention, and some scientists believe that effective means of preventing the disease may be available within a decade(<span style="line-height: 115%; font-family: 'Calibri','sans-serif'; color: #35332f; font-size: 14pt"><a href="http://websites.afar.org/site/PageServer?pagename=IA_d_alz_home"><font color="#800080">ref</font></a></span>).” Sooner or later it should become obvious that effective measures to prevent AD will most likely help prevent a lot of other age-related diseases as well and in fact will be measures to slow or prevent aging.</li>
<li style="line-height: normal; margin: 0in 0in 0.25in; background: white; color: #35332f; tab-stops: list .5in" class="MsoNormal">Current clinical trials of monoclonal antibodies will likely result in better means for control of beta-amyloid plaques and control of AD disease progression, but not cures for the disease itself which is most-likely caused by microglial cell senescence. I conjecture that the same will probably be true for other plaque-removing therapies using GCSF or IL-6.</li>
<li style="line-height: normal; margin: 0in 0in 0.25in; background: white; color: #35332f; tab-stops: list .5in" class="MsoNormal"><span style="font-size: 14pt">Based on what we know now, the two most promising general avenues for preventing microglial cell senescence are <em>approaches to preserving or extending telomere lengths</em> <em>in microglia</em>, and <em>approaches to refreshing and reinvigorating the somatic stem cells which differentiate into microglia</em>.<span>  </span>I have discussed such approaches extensively in this blog and will continue to do so.<span>  </span>They relate directly to the </span><span style="color: windowtext; font-size: 14pt"><a href="http://www.vincegiuliano.name/Antiagingfirewalls.htm#Telomereshorteningtheory"><font color="#800080">Telomere Shortening and Damage</font></a> <span> </span>and the <a href="http://www.vincegiuliano.name/Antiagingfirewalls.htm#Declinestemcelldifferentiationtheory"><font color="#800080">Stem Cell Supply Chain Breakdown</font></a></span><span style="font-size: 14pt"> theories of aging.</span></li>
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		<title>IPSCs, telomerase, and closing the loop in the stem cell supply chain</title>
		<link>http://anti-agingfirewalls.com/2010/02/22/ipscs-telomerase-and-closing-the-loop-in-the-stem-cell-supply-chain/</link>
		<comments>http://anti-agingfirewalls.com/2010/02/22/ipscs-telomerase-and-closing-the-loop-in-the-stem-cell-supply-chain/#comments</comments>
		<pubDate>Mon, 22 Feb 2010 18:05:14 +0000</pubDate>
		<dc:creator>admin</dc:creator>
		
		<category><![CDATA[Uncategorized]]></category>

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		<description><![CDATA[The flood of telomere/telomerase research news has gotten to be so great that I have to be finicky in selecting items reported in this blog.  That having been said, I think the new finding reported here is an important one when viewed in context.   
The 2009 study Telomeres Acquire Embryonic Stem Cell Characteristics in Induced Pluripotent [...]]]></description>
			<content:encoded><![CDATA[<p><span style="font-size: 14pt"><font face="Calibri">The flood of telomere/telomerase research news has gotten to be so great that I have to be finicky in selecting items reported in this blog.<span>  </span>That having been said, I think the new finding reported here is an important one when viewed in context.<span>  </span></font></span><span style="font-size: 14pt"><font face="Calibri"> </font></span></p>
<p><span style="font-size: 14pt"></span><span style="font-size: 14pt"><font face="Calibri"><span style="font-size: 14pt">The 2009 study <em><a href="http://www.ncbi.nlm.nih.gov/pubmed/19200803"><font color="#800080">Telomeres Acquire Embryonic Stem Cell Characteristics in Induced Pluripotent Stem Cells</font></a></em> was important in that it showed that reversion of cells to iPSC status fully restores telomerase activity to iPSCs, equivalent to that in embryonic stem cells (ESCs). “We show here that telomeres are elongated in iPS cells compared to the parental differentiated cells both when using four (Oct3/4, Sox2, Klf4, cMyc) or three (Oct3/4, Sox2, Klf4) reprogramming factors and both from young and aged individuals.<span>  </span>We demonstrate genetically that, during reprogramming, telomere elongation is usually mediated by telomerase and that iPS telomeres acquire the epigenetic marks of ES cells, including a low density of trimethylated histones H3K9 and H4K20 and increased abundance of telomere transcripts. Finally, reprogramming efficiency of cells derived from increasing generations of telomerase-deficient mice shows a dramatic decrease in iPS cell efficiency, a defect that is restored by telomerase reintroduction.”<span>  </span>Further, the </span><span style="font-size: 14pt">2009 publication <em><a href="http://www.biochemistry.uab.edu/jclub/2009/02.27.09.News.pdf"><font color="#800080">Balancing Out the Ends during iPSC Nuclear Reprogramming</font></a> </em>discusses how “</span><span style="font-size: 14pt">telomere length maintenance and long-term proliferative capacity of iPSCs is dependent on telomerase,” and concludes “</span></font><span style="color: black; font-size: 14pt"><font face="Calibri">Although a number of hurdles must still be cleared before iPS-based cell therapy becomes practical, the results (cited above) </font></span></span><span style="font-size: 14pt"><span style="color: black; font-size: 14pt"><font face="Calibri">suggest that reprogramming of telomerase and telomeres may not be one them.”</font></span></span></p>
<p><span style="font-size: 14pt"><span style="color: black; font-size: 14pt"></span><span style="font-family: 'Times New Roman','serif'; color: black; font-size: 12pt"></span><font face="Calibri"><span style="font-size: 14pt">The new this-week finding provides evidence that reverting cells to induced iPSC status fully restores their ability to express telomerase, even in a case when the original cells are seriously compromised in terms of telomere maintenance capability.<span>  </span>The 17 February 2010 online publication <em><a href="http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08792.html#B7">Telomere elongation in induced pluripotent stem cells from dyskeratosis congenita patients</a></em> </span><span style="font-size: 14pt">states “</span><span style="color: black; font-size: 14pt" lang="EN">Patients with dyskeratosis congenita (DC), a disorder of telomere maintenance, suffer degeneration of multiple tissues<sup><a href="http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08792.html#B1">1, </a><a href="http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08792.html#B2">2, </a><a href="http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08792.html#B3">3</a></sup>. Patient-specific induced pluripotent stem (iPS) cells<sup><a href="http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08792.html#B4">4</a></sup> represent invaluable <em>in vitro</em> models for human degenerative disorders like DC. A cardinal feature of iPS cells is acquisition of indefinite self-renewal capacity, which is accompanied by induction of the telomerase reverse transcriptase gene (<em>TERT</em>)<sup><a href="http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08792.html#B5">5, </a><a href="http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08792.html#B6">6, </a><a href="http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08792.html#B7">7</a></sup>. We investigated whether defects in telomerase function would limit derivation and maintenance of iPS cells from patients with DC. Here we show that reprogrammed DC cells overcome a critical limitation in telomerase RNA component (<em>TERC</em>) levels to restore telomere maintenance and self-renewal. We discovered that <em>TERC</em> upregulation is a feature of the pluripotent state, that several telomerase components are targeted by pluripotency-associated transcription factors, and that in autosomal dominant DC, transcriptional silencing accompanies a 3</span></font><span style="font-family: 'Verdana','sans-serif'; color: black; font-size: 14pt" lang="EN">′</span><span style="color: black; font-size: 14pt" lang="EN"><font face="Calibri"> deletion at the <em>TERC</em> locus. Our results demonstrate that reprogramming restores telomere elongation in DC cells despite genetic lesions affecting telomerase, and show that strategies to increase <em>TERC</em> expression may be therapeutically beneficial in DC patients.”</font></span><span style="font-size: 14pt"><font face="Calibri"> </font></span> </span></p>
<p><span style="font-size: 14pt"></span><span style="font-size: 14pt"><span style="color: black; font-size: 14pt" lang="EN"><a href="http://en.wikipedia.org/wiki/Dyskeratosis_congenita"><font face="Calibri" color="#800080">Dyskeratosis congenita</font></a><font face="Calibri"> (DC) “</font></span><span style="font-size: 14pt" lang="EN"><font face="Calibri">is a rare progressive </font><a href="http://en.wikipedia.org/wiki/Congenital_disorder" title="Congenital disorder"><font face="Calibri">congenital disorder</font></a><font face="Calibri"> which results in what in some ways resembles premature aging (similar to </font><a href="http://en.wikipedia.org/wiki/Progeria" title="Progeria"><font face="Calibri">progeria</font></a><font face="Calibri">). &#8212; Specifically, the disease is related to one or more mutations which directly or indirectly affect the </font><a href="http://en.wikipedia.org/wiki/Vertebrate" title="Vertebrate"><font face="Calibri">vertebrate</font></a><font face="Calibri"> </font><a href="http://en.wikipedia.org/wiki/Telomerase" title="Telomerase"><font face="Calibri">telomerase</font></a><font face="Calibri"> RNA component (TERC).”<span>  </span>Apparently several different telomerase-related mutations can lead to DC<span>  </span>- see </font><a href="http://bloodjournal.hematologylibrary.org/cgi/content/abstract/104/13/3936"><font face="Calibri" color="#800080">ref</font></a><font face="Calibri"> and the associated list of citations.<span>  </span>A 2008 publication <em><a href="http://www.pnas.org/content/105/23/8073.abstract"><font color="#800080">Mutations in the telomerase component NHP2 cause the premature ageing syndrome dyskeratosis congenita</font></a></em> explains “Most of the mutations so far identified in patients with classical dyskeratosis congenita impact either directly or indirectly on the stability of RNAs. In keeping with this effect, patients with dyskerin, NOP10, and now NHP2 mutations have all been shown to have low levels of telomerase RNA in their peripheral blood, providing direct evidence of their role in telomere maintenance in humans.”<span>  </span></font></span><span style="font-size: 14pt"><font face="Calibri"> </font></span></span></p>
<p><span style="font-size: 14pt"><span style="font-size: 14pt"></span><span style="font-size: 14pt"><font face="Calibri"><span style="font-size: 14pt">The amazing thing about the latest study is that activities of two of the four new genes introduced during cell reprogramming appear to override the effect of the mutated gene or genes that defines the genetic defect that causes DC</span><span style="color: black; font-size: 14pt" lang="EN">.<span>  </span>The reverted iPS cells appear to be capable of expressing telomerase and reproducing indefinitely, unlike the original DC cells which cannot express telomerase and die after a few generations.<span>   </span></span></font><span style="color: black; font-size: 14pt" lang="EN"><font face="Calibri"> </font></span></span></span></p>
<p><span style="font-size: 14pt"><span style="font-size: 14pt"><span style="color: black; font-size: 14pt" lang="EN"></span><span style="color: black; font-size: 14pt" lang="EN"><font face="Calibri">The iPSCs generated from DC patients continue to have the mutated genes that created the DC disease.<span>  </span>In fact, they should be like the patient’s original ESCs.<span>  </span>Therefore, there is no guarantee that cells those iPSCs differentiate into will have a capability to express telomerase; I suspect they won’t.<span>  </span>If the iPSCs are going to be used as a therapy for DC, they should be corrected first by splicing out the mutated genes and replacing them with good ones.<span>  </span>See the blog post <em><a href="http://anti-agingfirewalls.com/2009/08/02/treating-genetic-diseases-with-corrected-induced-pluripotent-stem-cells/"><font color="#800080">Treating genetic diseases with corrected induced pluripotent stem cells</font></a>.</em></font></span><span style="color: black; font-size: 14pt" lang="EN"><font face="Calibri"> </font></span><span style="color: black; font-size: 14pt" lang="EN"> </span></span></span></p>
<p><span style="font-size: 14pt"><span style="font-size: 14pt"><span style="color: black; font-size: 14pt" lang="EN"></span><font face="Calibri"><span style="color: black; font-size: 14pt" lang="EN">Besides possibly opening the way to a new therapy for DC, the finding provides further evidence that iPSCs could possibly close the loop in the stem cell supply chain enabling extraordinarily long lives.<span>  </span>See the blog post <em><a href="http://anti-agingfirewalls.com/2009/09/27/the-stem-cell-supply-chain-%e2%80%93-closing-the-loop-for-very-long-lives/"><font color="#800080">The stem cell supply chain – closing the loop for very long lives</font></a>. </em>The essence of the </span><em><span style="font-size: 14pt" lang="EN"><a href="http://www.vincegiuliano.name/Antiagingfirewalls.htm#Declinestemcelldifferentiationtheory"><font color="#800080">Stem Cell Supply Chain Breakdown</font></a></span></em><span style="font-size: 14pt" lang="EN"> theory of aging<em> </em>is that with aging the various pools of <a href="http://en.wikipedia.org/wiki/Adult_stem_cell"><font color="#800080">somatic (adult) stem cells</font></a> in the body become depleted and those adult stem cells that are left are less prone to differentiate.<span>  </span>I am talking about mesenchymal and hematopoietic stem cells among others.<span>  </span>Adult stem cells like all other cells are differentiated from our original embryonic stem cells (ESCs).<span>  </span>Unlike ESCs or iPSCs, however, the adult stem cells express less telomerase and have limited replicative lifespans. <span> </span>The result is that tissue renewal via replacement of normal tissue cells with differentiated somatic stem cells declines with age leading to the symptoms of aging.<span>  </span>So, I have speculated that if we can take a few normal body cells, revert them to iPSC status, multiply them in culture, correct them genetically if necessary, <span> </span>and then re-introduce them into our bodies so they differentiate to replace the somatic stem cells in their niches, we could create cell renewal that is now a once-through (open loop) process that runs down with age into a continuously operating (closed loop) process that might go a long way towards eliminating aging.<span>  </span>The new finding confirms that reverting cells to iPSC status also gets them off to a roaring start generating telomerase just like ESCs do, and can do that even when the original cells have broken telomerase-generating genes in the case of DC.</span></font><span style="font-size: 14pt" lang="EN"><font face="Calibri"> </font></span></span></span></p>
<p><span style="font-size: 14pt"><span style="font-size: 14pt"><span style="font-size: 14pt" lang="EN"></span><span style="font-size: 14pt" lang="EN"><span style="font-size: 14pt" lang="EN"><font face="Calibri">The idea of greatly enhancing longevity by closing the loop in the stem cell supply chain is of course a theory.<span>  </span>We will not know if it will work until it is tried.<span>  </span>The challenges that have to be overcome appear to be 1.<span>  </span>Reverting cells to iPSC status in substantial quantities and in ways that do not introduce foreign genes such as genes from a virus vector into the cell’s DNA, 2. Correcting the DNA in iPSCs for any mutational defects as pointed out above, and 3.<span>  </span>Introducing the iPSCs into the body in such a way that they differentiate in a controlled manner into somatic stem cells in the respective adult stem cell niches.<span>  </span>There has been significant progress on the first challenge as reported in the blog posts <em><a href="http://anti-agingfirewalls.com/2009/10/11/%e2%80%9cfootprint-free%e2%80%9d-ipscs-%e2%80%93-and-a-crazy-wager-offer/"><font color="#800080">Footprint-free” iPSCs – and a crazy wager offer</font></a></em>, <em><a href="http://anti-agingfirewalls.com/2009/06/26/update-on-induced-pluripotent-stem-cells/"><font color="#800080">Update on induced pluripotent stem cells</font></a>,</em></font></span><span style="font-family: 'Lucida Sans Unicode','sans-serif'; color: black; font-size: 8pt" lang="EN"> </span><span style="font-size: 14pt" lang="EN"><font face="Calibri">and</font></span><span style="font-family: 'Lucida Sans Unicode','sans-serif'; color: black; font-size: 8pt" lang="EN"> <span style="font-family: 'Calibri','sans-serif'; font-size: 14pt" lang="EN"><a href="http://anti-agingfirewalls.com/2010/01/26/progress-in-closing-the-stem-cell-supply-chain-loop/"><em><font color="#800080">Progress in closing the stem cell supply chain loop</font></em></a></span></span><span style="font-size: 14pt" lang="EN"><font face="Calibri">.<span>  </span>We appear to be moving along but much remains to be learned, particularly regarding the third challenge.</font></span><span style="font-size: 14pt"></span></span></span></span></p>
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		<title>Genome-wide association studies</title>
		<link>http://anti-agingfirewalls.com/2010/02/21/genome-wide-association-studies/</link>
		<comments>http://anti-agingfirewalls.com/2010/02/21/genome-wide-association-studies/#comments</comments>
		<pubDate>Sat, 20 Feb 2010 23:15:02 +0000</pubDate>
		<dc:creator>admin</dc:creator>
		
		<category><![CDATA[Uncategorized]]></category>

		<guid isPermaLink="false">http://anti-agingfirewalls.com/2010/02/21/genome-wide-association-studies/</guid>
		<description><![CDATA[A number of important genome-wide association studies (GWASs) have come to my attention in the last few weeks.  And I anticipate that the current steady stream of them will very soon become a roaring river.  These are studies that sort through genomes of large numbers of people looking for systematic gene variation differences, say comparing [...]]]></description>
			<content:encoded><![CDATA[<p><span style="color: #35332f; font-size: 14pt"><font face="Calibri">A number of important genome-wide association studies (GWASs) have come to my attention in the last few weeks.<span>  </span>And I anticipate that the current steady stream of them will very soon become a roaring river.<span>  </span>These are studies that sort through genomes of large numbers of people looking for systematic gene variation differences, say comparing genomes of people affected with a disease with genomes of people not so-affected<strong>.<span>  </span>“</strong></font></span><a title="association" name="association"></a><span style="font-family: 'Calibri','sans-serif'; font-size: 14pt; font-weight: normal"><strong>Association analysis:</strong> </span><font face="Calibri"><span><span> </span>A method of genetic analysis that compares the frequency of alleles between affected and unaffected individuals; a given <a href="http://www.phgfoundation.org/pages/resources/glossary.htm#alleles"><font color="#0000ff">allele</font></a> is considered to be associated with the disease if that allele occurs at a significantly higher frequency among affected individuals(<a href="http://www.phgfoundation.org/pages/resources/glossary.htm#gwa"><font color="#0000ff">ref</font></a>).”<span>  </span>Association studies</span><span style="color: #35332f; font-size: 14pt"> may also compare the genomes of specific samples of people (such as aged Ashkenazi</span><span style="color: black"><font size="3"> </font></span><span style="color: #35332f; font-size: 14pt">Jews living in Brooklyn or older women from Tanegashima island) or the genomes of disease tissues (such as from specific kinds of cancers) against the general human genome to determine possibly causal correlations between genomic variations and effects, such as extended longevity or the presence of a disease.<span>  </span></span></font></p>
<p><font face="Calibri"><span style="color: #35332f; font-size: 14pt"><span></span></span></font><span style="color: #35332f; font-size: 14pt"><font face="Calibri">I have already created a number of blog entries reporting on GWAS studies.<span>  </span>My focus here is on the general characteristics of GWAS studies, why they are important, why we will see more and more on them, and where they will lead us.</font></span></p>
<p><span style="color: #35332f; font-size: 14pt"></span><strong><span style="color: #35332f; font-size: 14pt"><font face="Calibri">GWAS studies and why they are important</font></span></strong></p>
<p><span style="color: #35332f; font-size: 14pt"><font face="Calibri"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><font color="#0000ff"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><span></span></span></span></font></span></span></font></span><span style="color: #35332f; font-size: 14pt"><font face="Calibri"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><font color="#0000ff"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><span></span></span></span></font></span></span></font></span><span style="color: #35332f; font-size: 14pt"><font face="Calibri"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><font color="#0000ff"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><span></span></span></span></font></span></span></font></span><span style="color: #35332f; font-size: 14pt"><font face="Calibri"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><font color="#0000ff"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><span></span></span></span></font></span></span></font></span><span style="color: #35332f; 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font-size: 14pt"><font face="Calibri"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><font color="#0000ff"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><span></span></span></span></font></span></span></font></span><span style="color: #35332f; font-size: 14pt"><font face="Calibri"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><font color="#0000ff"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><span></span></span></span></font></span></span></font></span><span style="color: #35332f; font-size: 14pt"><font face="Calibri"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><font color="#0000ff"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><span></span></span></span></font></span></span></font></span><span style="color: #35332f; font-size: 14pt"><font face="Calibri"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><font color="#0000ff"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><span></span></span></span></font></span></span></font></span><span style="color: #35332f; 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<p style="line-height: normal; margin: 0in 0in 0.25in 0.25in; background: white" class="MsoNormal"><span style="color: #35332f; font-size: 14pt">A good example is discussed in the recent blog post <em><a href="http://anti-agingfirewalls.com/2010/02/11/new-telomerase-finding-only-a-small-medium-sized-deal/">New telomerase finding only a small-medium sized deal</a>. </em>The publication</span><u><span class="MsoHyperlink"><strong><span style="font-size: 14pt"> </span></strong></span><span class="MsoHyperlink"><em><span style="color: windowtext; font-size: 14pt; text-decoration: none; text-underline: none" lang="EN"><a href="http://www.ncbi.nlm.nih.gov/pubmed/20139977?dopt=Abstract">Common variants near TERC are associated with mean telomere <span lang="EN-US">length</span></a></span></em></span><span class="MsoHyperlink"><span style="color: windowtext; font-size: 14pt; text-decoration: none; text-underline: none" lang="EN"> relates:  “We conducted genome-wide association analyses of mean leukocyte telomere length in 2,917 individuals, with follow-up replication in 9,492 individuals. We identified an association with telomere length on 3q26 (rs12696304, combined P = 3.72 x 10(-14)) at a locus that includes TERC, which encodes the telomerase RNA component.”<span>  </span>I go on in that post to comment that the</span></span></u><span style="font-size: 14pt" lang="EN"><font color="#000000"> study says that people who possessed the gene variation (minor allele of rs12696304) had shorter telomere lengths, equivalent to 3.6 years of aging.  People who had two copies of the variation had telomere lengths expected for people 7.2 years older.  The implication is that people with the gene defect age faster.<span class="MsoHyperlink"><span style="color: windowtext; text-decoration: none; text-underline: none">“ <span>  </span>The study required massive efforts to gather the data – mean leukocyte lengths of 2,917 plus 9,492 individuals.<span>  </span>Then it required a herculean data processing and pattern-recognition process to end up with a correlation-based association of shorter telomere lengths with a </span></span>minor allele of rs12696304 instead of millions of other possibilities.<span>  </span><span class="MsoHyperlink"><span style="color: windowtext; text-decoration: none; text-underline: none">And, finally, from this association an inference was drawn that people who have the allele will generally age faster and die sooner.</span></span></font></span></p>
<p><span><font color="#000000"><span class="MsoHyperlink"><span style="color: windowtext; text-decoration: none; text-underline: none"><span style="color: #35332f; font-size: 14pt">Another representative 2009 </span><span class="MsoHyperlink"><span style="color: windowtext; font-size: 14pt; text-decoration: none; text-underline: none" lang="EN">GWAS</span></span><span style="color: #35332f; font-size: 14pt" lang="EN"> </span><span style="color: #35332f; font-size: 14pt">relates gene polymorphisms to </span><span><span style="color: windowtext; font-size: 14pt; text-decoration: none; text-underline: none" lang="EN"><u>Alzheimer&#8217;s disease:</u></span><span><em>  </em></span><a href="http://www.ncbi.nlm.nih.gov/pubmed/19734902"><font color="#0000ff"><em>Genome-wide association study identifies variants at CLU and PICALM</em></font></a><em>. </em><span><em> </em><span><span style="font-family: 'Calibri','sans-serif'; color: #35332f; font-size: 14pt"><em>W</em></span><span class="MsoHyperlink"><span style="font-family: 'Calibri','sans-serif'; color: windowtext; font-size: 14pt; text-decoration: none; text-underline: none" lang="EN">e undertook </span></span><span style="font-family: 'Calibri','sans-serif'; color: windowtext; font-size: 14pt; text-decoration: none; text-underline: none" lang="EN">a two-stage genome-wide association study (GWAS) of Alzheimer&#8217;s disease (AD) involving over 16,000 individuals, the most powerful AD GWAS to date. In stage 1 (3,941 cases and 7,848 controls), we replicated the established association with the apolipoprotein E (APOE) locus (most significant SNP, rs2075650, P = 1.8 x 10(-157)) and observed genome-wide significant association with SNPs at two loci not previously associated with the disease &#8211;.” </span></span></span></span></span></span></font></span></p>
<p><span><font color="#000000"><span class="MsoHyperlink"><span style="color: windowtext; text-decoration: none; text-underline: none"><span><span><span><span style="font-family: 'Calibri','sans-serif'; color: windowtext; font-size: 14pt; text-decoration: none; text-underline: none" lang="EN"></span></span></span></span></span></span></font><font color="#000000"><span class="MsoHyperlink"><span style="color: windowtext; text-decoration: none; text-underline: none"></span></span></font></span><span><font color="#000000"><span class="MsoHyperlink"><span style="color: windowtext; text-decoration: none; text-underline: none"></span></span></font></span><span><font color="#000000"><span class="MsoHyperlink"><span style="color: windowtext; text-decoration: none; text-underline: none"></span></span></font></span><span><font color="#000000"><span class="MsoHyperlink"><span style="color: windowtext; text-decoration: none; text-underline: none"></span></span></font></span><span><font color="#000000"><span class="MsoHyperlink"><span style="color: windowtext; text-decoration: none; text-underline: none"></span></span></font></span><span><font color="#000000"><span class="MsoHyperlink"><span style="color: windowtext; text-decoration: none; text-underline: none"></span></span></font></span><span><font color="#000000"><span class="MsoHyperlink"><span style="color: windowtext; text-decoration: none; text-underline: none"></span></span></font></span><span><font color="#000000"><span class="MsoHyperlink"><span style="color: windowtext; text-decoration: none; text-underline: none"></span></span></font></span><span><font color="#000000"><span class="MsoHyperlink"><span style="color: windowtext; text-decoration: none; text-underline: none"></span></span></font></span><span><font color="#000000"><span class="MsoHyperlink"><span style="color: windowtext; text-decoration: none; text-underline: none"></span></span></font></span><span><font color="#000000"><span class="MsoHyperlink"><span style="color: windowtext; text-decoration: none; text-underline: none"></span></span></font></span><span><font color="#000000"><span class="MsoHyperlink"><span style="color: windowtext; text-decoration: none; text-underline: none"></span></span></font></span><span><font color="#000000"><span class="MsoHyperlink"><span style="color: windowtext; text-decoration: none; text-underline: none"></p>
<p style="line-height: normal; margin: 0in 0in 0.25in 0.25in; background: white" class="MsoNormal"><span style="color: #35332f; font-size: 14pt"><font face="Calibri"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><font color="#0000ff"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><span style="font-size: 14pt"><font color="#000000">The 2008 review study </font><em><a href="http://www.iseventsolutions.com/epi/course_program/pdf/John_Witte_mccarthy_NRG2008.pdf">Genome-wide association studies for complex traits: consensus, uncertainty and challenges</a></em><font color="#000000"> describes progress as of two years ago and highlights problems as seen at that time “The first wave of large-scale, high-density genome-wide association (GWA) studies has improved our understanding of the genetic basis of many complex traits. For several diseases, including type 1 and type 2 diabetes, inflammatory bowel disease, prostate cancer and breast cancer, there has been rapid expansion in the numbers of loci implicated in predisposition. For others, such as asthma, coronary heart disease and atrial fibrillation, fewer novel loci have been found, although opportunities for mechanistic insights are equally promising. Several common variants influencing important continuous traits, such as lipids, height and fat mass, have also been found. <span> </span>&#8211;<span>  </span>These findings are providing valuable clues to the allelic architecture of complex traits in general. <span> </span>At the same time, many methodological and technical issues that are relevant to the successful prosecution of largescale association studies have been addressed. &#8212; However, despite understandable celebration of these achievements, sober reflection reveals many challenges ahead. &#8212; Much work remains to obtain a complete inventory of the variants at each locus that contribute to disease risk and to define the molecular mechanisms through which these variants operate. The ultimate objectives — full descriptions of the susceptibility architecture of major biomedical traits and translation of the findings into clinical practice — remain distant.”<span>  </span>Much distance still remains but since this was written there has been a significant and steady acceleration in the rate of publication of</font></span><span style="color: #35332f; font-size: 14pt"> genome-wide association studies</span></span></span></font></span></span></font></span></p>
<p style="line-height: normal; margin: 0in 0in 0.25in 0.25in; background: white" class="MsoNormal"><span style="color: #35332f; font-size: 14pt"><font face="Calibri"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><font color="#0000ff"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><span style="color: #35332f; font-size: 14pt"></span></span></span></font></span></span></font></span><span style="color: #35332f; font-size: 14pt"><font face="Calibri"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><font color="#0000ff"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><span style="color: #35332f; font-size: 14pt"><span style="font-size: 14pt"><font color="#000000">There are already hundreds of</font></span><span> GWAS studies, each providing its own insights.<span>  </span>A few more (<a href="http://www.ncbi.nlm.nih.gov/gap"><font color="#0000ff">ref</font></a>) listed here for flavor are <em><a href="http://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000138.v1.p1"><font color="#0000ff">Genetic Determinants of Bone Fragility in European-American Premenopausal Women</font></a>, <span> </span></em><em><span style="font-size: 14pt"><a href="http://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000169.v1.p1"><font color="#0000ff">Whole Genome Association Study of Visceral Adiposity in the HABC Study</font></a>, <a href="http://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000126.v1.p1"><font color="#0000ff">CIDR: Genome Wide Association Study in Familial Parkinson Disease (PD)</font></a>, <a href="http://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000019.v1.p1"><font color="#0000ff">Collaborative Association Study of Psoriasis</font></a>, <a href="http://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000021.v2.p1"><font color="#0000ff">Genome-Wide Association Study of Schizophrenia</font></a>, </span></em></span></span></span></span></font></span></span></font></span><span style="color: #35332f; font-size: 14pt"><font face="Calibri"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><font color="#0000ff"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><span style="color: #35332f; font-size: 14pt"><span><em><span style="font-size: 14pt"><a href="http://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000122.v1.p1"><font color="#0000ff">Whole Genome Association Study of Systemic Lupus Erythematosus</font></a></span></em><font color="#000000"> </font></span><span><font color="#000000">and </font><shape o:spid="_x0000_i1026" type="#_x0000_t75" style="width: 10.5pt; height: 12pt" id="ic_0185"></shape><imagedata o:href="http://www.ncbi.nlm.nih.gov/portal/portalrc.fcgi/38572/img/19746" src="file:///C:\Users\VINCEG~1\AppData\Local\Temp\msohtmlclip1\01\clip_image001.gif"></imagedata></span><span class="MsoHyperlink"><em><span style="font-size: 14pt"><a href="http://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000217.v1.p1">Genome-Wide Association Study of Leprosy in Chinese Population</a>.<span>  </span></span></em></span></span></span></span></font></span></span></font></span></p>
<p><span style="color: #35332f; font-size: 14pt"><font face="Calibri"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><font color="#0000ff"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><span style="color: #35332f; font-size: 14pt"><span class="MsoHyperlink"><em><span style="font-size: 14pt"><span></span></span></em></span><span style="color: #35332f; font-size: 14pt">Because of their importance, the National Human Genome Institute has created a <em><a href="http://www.genome.gov/gwastudies/">Catalog of Published Genome-Wide Association Studies</a>.<span>  </span></em>“</span><span style="font-size: 14pt"><font color="#000000">The curated, searchable and publically accessible database contains information on over 350 publication, linking around 1,640 single nucleotide polymorphisms (SNPs) to more than 80 different diseases and traits. &#8212; This catalogue allows some of the trends and genomic characteristics of trait or disease associated SNPs to be analysed across multiple different publications [</font><a target="_blank" href="http://www.ncbi.nlm.nih.gov/pubmed/19474294">Hindorff LA <em> et al. </em>(2009) PNAS doi/10.1073</a><font color="#000000">], leading to a number of important insights(</font><a href="http://www.phgfoundation.org/news/4700/">ref</a><font color="#000000">).”</font></span><span style="color: #35332f; font-size: 14pt"> </span></span></span></span></font></span></span></font></span></p>
<p><span style="color: #35332f; font-size: 14pt"><font face="Calibri"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><font color="#0000ff"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><span style="color: #35332f; font-size: 14pt"><span style="color: #35332f; font-size: 14pt"></span><span style="color: #35332f; font-size: 14pt">What is included in the catalog is selective “<strong>The genome-wide association study (GWAS) publications listed here</strong> include only those attempting to assay at least 100,000 single nucleotide polymorphisms (SNPs) in the initial stage. Publications are organized from most to least recent date of publication, indexing from online publication if available. Studies focusing only on candidate genes are excluded from this catalog. &#8212; SNP-trait associations listed here are limited to those with p-values &lt; 1.0 x 10-5 (see full methods for additional details).”</span></span></span></span></font></span></span></font></span></p>
<p><span style="color: #35332f; font-size: 14pt"><font face="Calibri"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><font color="#0000ff"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><span style="color: #35332f; font-size: 14pt"><span style="color: #35332f; font-size: 14pt"></span><span style="font-size: 14pt"></span><span style="font-size: 14pt"><font color="#000000">One implication of the studies in the catalog is the critical importance of epigenetic mechanisms of gene regulation.<span>  </span>As stated in a <em>phg Foundation</em> </font><a href="http://www.phgfoundation.org/news/4700/">article on the catalog</a><font color="#000000"> “ &#8212; the vast majority of genetic variation associated with complex diseases or traits lies outside of the coding regions of the genome – 45% of SNPs are located inside introns, which are located within genes but are spliced out prior to translation into functional proteins, and 43% of SNPs lie between genes. Whilst in some ways this result is unsurprising, as coding genes only account for around 1% of the genome, it is still unexpected and suggests that regulation of gene expression plays an important role in determining common traits and diseases.”<span>  </span>The catalog shows other interesting patterns.<span>  </span>“Interestingly, amongst those associations that have been attributed to specific genes (which are located near the trait or disease associated SNPs), 18 regions have been linked with multiple different diseases, suggesting a common underlying aetiological pathway. For example, the major histocompatibility complex (MHC), which plays an important role in the immune system, has been implicated in 10 different conditions ranging from autoimmune disorders to lung cancer. Discoveries of a shared underlying genetic basis for different diseases are likely to become increasingly common as more gene-disease associations are uncovered, and raise a complex set of ethical implications with regards to genetic testing(</font><a href="http://www.phgfoundation.org/news/4700/">ref</a><font color="#000000"><u>).</u></font></span><span style="font-size: 14pt"><font color="#000000"><u> </u></font></span></span></span></span></font></span></span></font></span></p>
<p><span style="color: #35332f; font-size: 14pt"><font face="Calibri"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><font color="#0000ff"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><span style="color: #35332f; font-size: 14pt"><span style="font-size: 14pt"></span><span style="font-size: 14pt"><span style="font-family: 'Calibri','sans-serif'; font-size: 14pt"><font color="#000000">The 2009 publication </font><em><a href="http://www.ncbi.nlm.nih.gov/pubmed/19474294">Potential etiologic and functional implications of genome-wide association loci for human diseases and traits</a><font color="#000000"> </font></em><font color="#000000">describes additional associations seen in the catalog. “This new online resource, together with bioinformatic predictions of the underlying functionality at trait/disease-associated loci, is well-suited to guide future investigations of the role of common variants in complex disease etiology.”</font></span></span></span></span></span></font></span></span></font></span></p>
<p><span style="color: #35332f; font-size: 14pt"><font face="Calibri"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><font color="#0000ff"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><span style="color: #35332f; font-size: 14pt"><span style="font-size: 14pt"><span style="font-family: 'Calibri','sans-serif'; font-size: 14pt"></span><span style="font-size: 14pt"><font color="#000000">Association studies have provided the basis for construction of specific genomic-association databases like </font></span><em><span style="font-size: 14pt"><a href="http://nar.oxfordjournals.org/cgi/content/full/38/suppl_1/D111"><font color="#0000ff">RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes</font></a><font color="#000000">.<span>  </span></font></span></em><span style="font-size: 14pt"><font color="#000000">“The RegPrecise database &#8212; was developed for capturing, visualization and analysis of predicted transcription factor regulons in prokaryotes that were reconstructed and manually curated by utilizing the comparative genomic approach. A significant number of high-quality inferences of transcriptional regulatory interactions have been already accumulated for diverse taxonomic groups of bacteria.”<span>  </span></font></span><span style="font-size: 14pt"><font color="#000000"> </font></span></span></span></span></span></font></span></span></font></span></p>
<p><span style="color: #35332f; font-size: 14pt"><font face="Calibri"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><font color="#0000ff"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><span style="color: #35332f; font-size: 14pt"><span style="font-size: 14pt"><span style="font-size: 14pt"></span></span><span style="font-size: 14pt"><font color="#000000">Along with the development of databases have been the development of research and computational tools.<span>  </span>For example, the publication </font><em><a href="http://www.bio5.org/recomb2009/abstracts/p76.pdf"><font color="#0000ff">Platform for accurate semi-automatic inference of regulons by comparative genomics approach</font></a><font color="#000000"> </font></em><font color="#000000">provides an approach to “providing effective tools to enable high-quality reconstruction of transcriptional regulatory networks (TRN).” – “We implemented a web-based computational platform for fast and accurate semi-automatic inference of regulons in well-populated groups of closely-related bacterial genomes.” </font></span><span style="font-size: 14pt"><font color="#000000"> </font></span></span></span></span></font></span></span></font></span></p>
<p><span style="color: #35332f; font-size: 14pt"><font face="Calibri"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><font color="#0000ff"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><span style="color: #35332f; font-size: 14pt"><span style="font-size: 14pt"></span><span style="font-size: 14pt"><strong><span style="color: #35332f; font-size: 14pt">Why more and more GWAS studies?</span></strong><strong><span style="color: #35332f; font-size: 14pt"> </span></strong></span></span></span></span></font></span></span></font></span></p>
<p><span style="color: #35332f; font-size: 14pt"><font face="Calibri"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><font color="#0000ff"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><span style="color: #35332f; font-size: 14pt"><span style="font-size: 14pt"><strong><span style="color: #35332f; font-size: 14pt"></span></strong></span><span style="font-size: 14pt"><span style="color: #35332f; font-size: 14pt">There are likely to be more and more GWAS studies and they are likely to involve larger and larger population samples.<span>  </span>Factors driving this growth are 1.<span>  </span>Knowledge breeds a quest for more knowledge and studies can be built on earlier studies; for example the genome of gliablastoma cells is known(<a href="http://www.nature.com/nature/journal/v455/n7216/abs/nature07385.html"><font color="#0000ff">ref</font></a>) facilitating GWA studies related to gliablastoma, 2.<span>  </span>Underlying cost of genome sequencing continues to plummet making GWA studies ever-more economically feasible (see <a href="http://anti-agingfirewalls.com/2010/02/04/my-personal-longevity-%e2%80%93-the-race-between-death-stalker-and-life-prolonger/">this</a> recent blog post), 3. As more and more-studies are added to the catalog and complete databases like <a href="http://nar.oxfordjournals.org/cgi/content/full/38/suppl_1/D111"><font color="#0000ff">RegPrecise</font></a> are built up, new studies can be partially based on them, 4. New and ever-better software tools are becoming available for identifying associations(<a href="http://genome.cshlp.org/content/18/4/640.full.pdf"><font color="#0000ff">ref</font></a>)(<a href="http://www.docstoc.com/docs/2136857/PLINK-gPLINK-Haploview-Whole-genome-association-software-tutorial"><font color="#0000ff">ref</font></a>), and 5 ever more-powerful and cheaper computers are allowing association computations which were virtually impossible a few years back when the human genome was first being sequenced.<span>  </span>In other words, <em><a href="http://anti-agingfirewalls.com/2009/03/29/factors-that-drive-giuliano%e2%80%99s-law/"><font color="#0000ff">the factors which empower Giuliano’s Law</font></a></em> are at work here and the rate of change is exponential, not linear.<span>  </span></span><span style="color: #35332f; font-size: 14pt"> </span><span style="color: #35332f; font-size: 14pt"> </span></span></span></span></span></font></span></span></font></span></p>
<p><span style="color: #35332f; font-size: 14pt"><font face="Calibri"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><font color="#0000ff"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><span style="color: #35332f; font-size: 14pt"><span style="font-size: 14pt"><span style="color: #35332f; font-size: 14pt"></span><strong><span style="color: #35332f; font-size: 14pt">Implications of GWAS studies</span></strong><strong><span style="color: #35332f; font-size: 14pt"> </span></strong></span></span></span></span></font></span></span></font></span></p>
<p></span></span></font></span><span style="color: #35332f; font-size: 14pt"><font face="Calibri"><span style="font-size: 14pt" lang="EN"><span class="MsoHyperlink"><font color="#0000ff"><span style="color: #35332f; font-size: 14pt"><span style="font-size: 14pt"><span style="color: #35332f; font-size: 14pt"></span><span style="color: #35332f; font-size: 14pt"><span style="color: #35332f; font-size: 14pt"><font face="Calibri">Going back to my blog post<em> <a href="http://anti-agingfirewalls.com/2010/02/04/my-personal-longevity-%e2%80%93-the-race-between-death-stalker-and-life-prolonger/">My personal longevity – the race between death-stalker and life-prolonger</a></em>, watch out Death Stalker.<span>  </span>The men and women doing genome-wide association studies are ultimately working for Life Prolonger, not for you.<span>  </span>They are seriously on your case and what they are turning up is going to help convince you to give us lots more years in our life spans.</font></span></span></span></span></font></span></span></font></span></p>
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		<title>“I have never seen a doctor”</title>
		<link>http://anti-agingfirewalls.com/2010/02/18/%e2%80%9ci-have-never-seen-a-doctor%e2%80%9d/</link>
		<comments>http://anti-agingfirewalls.com/2010/02/18/%e2%80%9ci-have-never-seen-a-doctor%e2%80%9d/#comments</comments>
		<pubDate>Thu, 18 Feb 2010 19:59:50 +0000</pubDate>
		<dc:creator>admin</dc:creator>
		
		<category><![CDATA[Uncategorized]]></category>

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		<description><![CDATA[“If I saw a doctor, he would just find something wrong with me.”  Those are words my stepmother Ann told to me last Friday.  I was fortunate to be able to spend a good amount of time with her and Terry, Ann’s son and my half-brother, in the course of a visit to New York [...]]]></description>
			<content:encoded><![CDATA[<p><span style="color: #35332f; font-size: 14pt"><font face="Calibri">“If I saw a doctor, he would just find something wrong with me.”<span>  </span>Those are words my stepmother Ann told to me last Friday.<span>  </span>I was fortunate to be able to spend a good amount of time with her and Terry, Ann’s son and my half-brother, in the course of a visit to New York last week. <span> </span><span> </span>Ann lives independently in her own apartment in the upper West side of the City and, at age 92, it appears that there is nothing wrong with her.<span>  </span>She gets around easily walking in the city, does her own shopping, is mentally lucid and curious, loves to talk about things going on in the world, goes to movies, theatre and opera, and often sees Terry who lives only a few blocks away.<span>  </span>She had no trouble navigating the massive hallways and stairways of the Museum of Natural History for several hours with us and did not seem to get a bit tired.<span>  </span></font></span></p>
<p><span style="color: #35332f; font-size: 14pt"><font face="Calibri"><span></span>Except for a minor cold now or then, Ann never gets sick. She has a very positive attitude towards life and seems never to experience stress. <span> </span>Ann was born in a small mining town in Iowa and spent her youth there.<span>  </span>She Moved to Des Moines</font></span><span style="font-family: 'Arial','sans-serif'; color: black"><font size="3"> </font></span><span style="color: #35332f; font-size: 14pt"><font face="Calibri">at about 19, and then later to Detroit, to a 90-acre farm in Yale Michigan, and then to New York.<span>  </span><span> </span>Ann tells me that when she was about 11 she came across copies of a now long-defunct <em><a href="http://en.wikipedia.org/wiki/Bernarr_Macfadden"><font color="#800080">Macfadden</font></a></em> health magazine which strongly influenced her to have healthy eating habits.<span>  </span>She mostly avoids junk food. <span> </span><span> </span>Ann takes no medicines. She started taking a multivitamin pill and fish oil only this year.<span>  </span>Other than that she has taken no supplements.<span>  </span><span> </span></font></span></p>
<p><span style="color: #35332f; font-size: 14pt"><font face="Calibri"><span></span></font></span></p>
<p><span style="color: #35332f; font-size: 14pt"><font face="Calibri"><span></span></font></span><span style="color: #35332f; font-size: 14pt"><font face="Calibri">So, speaking as somebody who has seen many doctors and takes many supplements, I do infer a few things about longevity from the example of Ann.<span>  </span></font></span></p>
<p><span style="color: #35332f; font-size: 14pt"><font face="Calibri"><span></span></font></span><span style="color: #35332f; font-size: 14pt"><span><font face="Calibri">1.</font><span style="font: 7pt 'Times New Roman'">     </span></span></span><span style="color: #35332f; font-size: 14pt"><font face="Calibri">Ann <em>must be a winner in the longevity genetic luck-of-the-draw</em>.<span>  </span>Her mother lived to 96 and her maternal grandmother to 92.<span>  </span>On the other hand all seven of her siblings have passed away, and all were younger than Ann.<span>  </span><span> </span>Her genome must contain a good pro-longevity combination of genes.<span>  </span>I think I could convince Ann to let her genome be sequenced if I could find a reputable longevity-oriented genetics researcher interested in finding out what is keeping her going.</font></span></p>
<p><span style="color: #35332f; font-size: 14pt"></span><span style="color: #35332f; font-size: 14pt"><span><font face="Calibri">2.</font><span style="font: 7pt 'Times New Roman'">     </span></span></span><font face="Calibri"><em><span style="color: #35332f; font-size: 14pt">Ann is aging significantly more slowly than many of us.<span>  </span></span></em><span style="color: #35332f; font-size: 14pt">The rate of aging is not the same for everybody.<span>  </span>Many people are run-down, sick and old at 50 or 60. <span> </span>Ann is in good physical and mental shape and at 92 probably has a number of years still to go in good health. <span> </span>Of course, I personally want and would love that. </span></font></p>
<p><font face="Calibri"><span style="color: #35332f; font-size: 14pt"></span></font><span style="color: #35332f; font-size: 14pt"><span><font face="Calibri">3.</font><span style="font: 7pt 'Times New Roman'">     </span></span></span><font face="Calibri"><em><span style="color: #35332f; font-size: 14pt">Ann’s longevity and health has nothing to do with medical progress or getting good medical advice or taking the latest drugs.<span>  </span></span></em><span style="color: #35332f; font-size: 14pt">She has steered clear of those things all her life.<span>  </span></span></font></p>
<p><font face="Calibri"><span style="color: #35332f; font-size: 14pt"><span></span></span></font><span style="color: #35332f; font-size: 14pt"><span><font face="Calibri">4.</font><span style="font: 7pt 'Times New Roman'">     </span></span></span><font face="Calibri"><em><span style="color: #35332f; font-size: 14pt">Longevity implies not getting the diseases of old age</span></em><span style="color: #35332f; font-size: 14pt">, <em>not managing them, not curing them once you get them. </em><span> </span>The same genetic activation pathways that lead to long lives keep us healthy.<span>  </span>This appears to be a lesson learned by researchers at the <a href="http://kenyonlab.ucsf.edu/html/lab_overview.html"><font color="#800080">Kenyon Lab</font></a> at the University of California, the people who did some of the original research on extending the lifespan of nematodes. “Our work has now led to the discovery that mammalian aging is also regulated hormonally by insulin and IGF-1 endocrine system and has catalyzed a fundamental shift in the way scientists view the aging process, from one that is inevitable and intractable to one that is plastic and subject to regulation. Our findings have important disease implications, since these long-lived mutants have been found to be resistant to many age-related diseases. This raises the possibility of a new therapeutic strategy based on the ability to postpone the onset of age-related disease by slowing the aging process itself(<a href="http://kenyonlab.ucsf.edu/html/lab_overview.html"><font color="#800080">ref</font></a>).”</span></font></p>
<p><font face="Calibri"><span style="color: #35332f; font-size: 14pt"></span></font><span style="color: #35332f; font-size: 14pt"><span><font face="Calibri">5.</font><span style="font: 7pt 'Times New Roman'">     </span></span></span><font face="Calibri"><em><span style="color: #35332f; font-size: 14pt">Successful aging might mean a lot fewer encounters with the medical establishment</span></em><span style="color: #35332f; font-size: 14pt"> because a lot fewer sickness will come up.<span>  </span>Successful anti-aging strategies might make us like Ann.<span>  </span>Instead of senior citizens requiring 3-5 medical appointments a week, a yearly checkup might do.<span>  </span>Most medical practice is repair-shop in nature, dealing with managing or curing sicknesses that have emerged.<span>  </span>If sicknesses emerge a lot less, the need for doctors or hospitals recedes in importance. So, some people on a successful anti-aging track may develop the same attitude as Ann.<span>  </span>“Who needs a Doctor?”</span></font></p>
<p><font face="Calibri"><span style="color: #35332f; font-size: 14pt"></span></font><span style="color: #35332f; font-size: 14pt"><span><font face="Calibri">6.</font><span style="font: 7pt 'Times New Roman'">     </span></span></span><span style="color: #35332f; font-size: 14pt"><font face="Calibri">The annual health-care cost for Ann is zero.<span>  </span>Her medicare cost is zero.<span>  </span><em>If we could all extend our healthy lifespans by ten years it would be worth about ten trillion dollars in decreased health care costs and perhaps twice that much more in productivity gains</em>. (Current US health care costs are something like 3 trillion dollars representing over 17% of gross domestic product(</font><a href="http://www.kaiseredu.org/topics_im.asp?imID=1&amp;parentID=61&amp;id=358"><font face="Calibri" color="#800080">ref</font></a><font face="Calibri">), and a disproportionally large slice of the cost is for people in the last 10 years of their lives.)</font></span></p>
<p><span style="color: #35332f; font-size: 14pt"></span><span style="line-height: 115%; font-family: 'Calibri','sans-serif'; color: #35332f; font-size: 14pt">Longevity is by far the best area of investment for economic development.<span>  </span>With an increase of 10 years in our average healthy lifespan, we could quickly wipe out both the national budget deficit and the national debt.</span></p>
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